Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2026 ATGTCGCAACAAGAGCGATCAACGGCCGCCGCGGCTTTTCTAACAAAAACTTACAATATGGTGGATGATCCTACGACGGATGATCTTATTTGCTGGGGTATCAATGGAAAGAGTTTTGTTGTCATTCATCATGCAGAGTTTTCGAGGGACTTACTTCCCAAATATTTTAAGCACAACAATTTCTCTAGTTTTATTCGACAGCTTAACACCTATGGATTCCGAAAAATGGTTAGTGACAAATGGGAGTTCGCCAACGAGAATTTCAAGCGAGGAGAGAAGGAGCTACTGCCTGCAATCAAGCGTCGAAAGAGCCAATCATATGTGGCCATATCGAATTACGGTCCCAATGGCATGGGCTCAACCTCGACCGGATCAGGATCAACGGAGCGAAATATCCATCACATGAATTTATTGAGCGAAAACGAGAAGCTGAAGAAGGAGAACGAGGAACTTAAGTGTCAATTGGCTCTTGCGAAGAAGCAGTGCGACGAGCTTGTCGCTCTTAGTGGCAACATCAATGTTGGAGCTGATCAGATTAGCCCCATCATTCAGCAAGTAACAGGTGGGTCCAGCCATGATGCGGCGCGTTCTGATGATGCCGCTGTAGGAGAAGCTAAACTTATGGGTGGAGAGGGTGTGAAGCTGTTCGGAGTTTGGATGAATGGTGATGGAAAAGGGGAAGACAAAGTGAAGATGGAAAATGGCGAGGGGAACAGTCGCAAGAGGGGACATGAAGAGCCAATTGGTGGCGTCAACAAGGACACATCTTAA 771 0.4643 MSQQERSTAAAAFLTKTYNMVDDPTTDDLICWGINGKSFVVIHHAEFSRDLLPKYFKHNNFSSFIRQLNTYGFRKMVSDKWEFANENFKRGEKELLPAIKRRKSQSYVAISNYGPNGMGSTSTGSGSTERNIHHMNLLSENEKLKKENEELKCQLALAKKQCDELVALSGNINVGADQISPIIQQVTGGSSHDAARSDDAAVGEAKLMGGEGVKLFGVWMNGDGKGEDKVKMENGEGNSRKRGHEEPIGGVNKDTS* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2026 256 SMART hsfneu3 9 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g2026 256 Coils Coil 134 168 - -
Psa4g2026 256 ProSitePatterns HSF-type DNA-binding domain signature. 52 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g2026 256 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 125 233 IPR027725 -
Psa4g2026 256 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 110 IPR027725 -
Psa4g2026 256 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g2026 256 PRINTS Heat shock factor (HSF) domain signature 51 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g2026 256 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g2026 256 Gene3D - 5 103 IPR036388 -
Psa4g2026 256 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 7 110 - -
Psa4g2026 256 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 125 233 - -
Psa4g2026 256 MobiDBLite consensus disorder prediction 224 256 - -
Psa4g2026 256 Pfam HSF-type DNA-binding 13 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g2026 256 SUPERFAMILY "Winged helix" DNA-binding domain 11 102 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2026 Psa-Chr4 153883730 153888626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2026 8 229 HSF AT4G36990 45.122 6.53e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa4g2026 HSF_DNA-bind 3.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2026 K09419 - gmx:100801897 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2026 4 153883730 153888626 Psa4g2026 4 153883730 153888626 ECH
Psa2g3795 2 402488401 402491165 Psa4g2026 4 153883730 153888626 PCT