Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2024 ATGGAGCAACGAAAGCTTGTGGTTATGAGTATCCCATGGGACGTTGATACTGAGGGCTTGAAAGAATATATGAGCAAATTTGGTGAGCTAGAAGATTGTTTTGTTATAAAGGATCGGTCGAGTGGCCGGTCTCGCGGTTTTGGATATGTTACATTTACATCAGTAGATGATGCTAAGAAAGTGCTATCCAGTGAACACAGTCTTGGCAACAGAATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACTAGTCAAAAAGGTTGCCAGAATCTTTGTGGGAAGGATTGCCCCATCAGTAACAGAAGCAACTTTTAGGAGTCATTTTGAGAAATACGGTGATATAACAGATTTATATATGCCAAAGGATCTAGGATCAAAAACACATCGAGGAATTGGTTTTATCACTTTTGCAAGTGCAGATTCTGTTGAGAACTTGATGAAAGAAACCCATGAACTGGGAGGTTCTGATGTGGTGATTGATCAAGCAACACCTAAGGAAGATGATTTCAAGCCAATTGGCAGAACCAGAACGTCACAAGGAGGACATAGTGCATATAATAATGCTTATATTTCTGCACCAACTAGATATGCAGCACTTGCTGCTCCAACTATGTATGATCGTCCCAGTTCAATTTATGGAAGGCGAGAACCTGTTCGTGGAATGAGCAAAAAGATTTTTGTTGGCCGTCTTCCCCAGGAGGCAACCACTCAGGATCTTCGCCTGTATTTTGAAAGATTTGGCCATATATTGGATGTTTATATTCCTAGGCATGTCAAGAAATCTGGTCATAGAGGCTTTGGTTTTGTGACTTTTGCGGACTATGGTGTTGCAGATTGTGTCTCTCGAAGATCTCATGAAATTTGTGGGCGTCAGGTTGTCATAGGTTCACCCGCACCTCTTGATGACACAGGGCCTAGTGGTAATTCTATGGTGAATAATAGTATGTATTCTTACAGGCGATATGGTGCTCCTGTGAGGCCATATTTTGATCGAAGTTCTGGGAGGCCGTATGTGAGGATGTACGATAACCGGGACTTCGACAATAGGGGTTATGGAGTTGCTAGTAGAAGACCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1119 0.4281 MEQRKLVVMSIPWDVDTEGLKEYMSKFGELEDCFVIKDRSSGRSRGFGYVTFTSVDDAKKVLSSEHSLGNRMLEVKVATPKEEMRALVKKVARIFVGRIAPSVTEATFRSHFEKYGDITDLYMPKDLGSKTHRGIGFITFASADSVENLMKETHELGGSDVVIDQATPKEDDFKPIGRTRTSQGGHSAYNNAYISAPTRYAALAAPTMYDRPSSIYGRREPVRGMSKKIFVGRLPQEATTQDLRLYFERFGHILDVYIPRHVKKSGHRGFGFVTFADYGVADCVSRRSHEICGRQVVIGSPAPLDDTGPSGNSMVNNSMYSYRRYGAPVRPYFDRSSGRPYVRMYDNRDFDNRGYGVASRRPSRADWRYRPY* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2024 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Psa4g2024 372 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Psa4g2024 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 64 IPR000504 GO:0003723
Psa4g2024 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 153 IPR000504 GO:0003723
Psa4g2024 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 280 IPR000504 GO:0003723
Psa4g2024 372 Gene3D - 90 173 IPR012677 -
Psa4g2024 372 PANTHER OS01G0945800 PROTEIN 3 372 - -
Psa4g2024 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 303 IPR000504 GO:0003723
Psa4g2024 372 Gene3D - 223 306 IPR012677 -
Psa4g2024 372 SMART rrm1_1 228 299 IPR000504 GO:0003723
Psa4g2024 372 SMART rrm1_1 93 164 IPR000504 GO:0003723
Psa4g2024 372 SMART rrm1_1 5 76 IPR000504 GO:0003723
Psa4g2024 372 SUPERFAMILY RNA-binding domain, RBD 90 188 IPR035979 GO:0003676
Psa4g2024 372 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 372 - -
Psa4g2024 372 Gene3D - 1 89 IPR012677 -
Psa4g2024 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Psa4g2024 372 SUPERFAMILY RNA-binding domain, RBD 226 326 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2024 Psa-Chr4 153761445 153768213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2024 6 277 Eukaryotic Initiation Factors Gene Family AT3G16380 21.505 7.56e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2024 K14411 - cpap:110814382 545.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2024 4 153761445 153768213 Psa4g2024 4 153761445 153768213 ECH