Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2023 ATGGACATGATATCAATGATGATGCAAATGGAAAAGTTCCCTGATAATTACTCTGAACCTTCCACATACCAAGAAATTATCAATGGAACTTCCACTACCAATACTGCTCCATTATTTAACTTATCTCCACAAACCTTGACTGATCCATTTCTACACTCCAATGTCAATTTCAACAACACTATCCAACAACAATCACCTCTTTATAACCCTAACTCTTCTGATAAGAAGAATTCCATGGCGGCCATGAGGGAAATGATATTTAGAATAGCAGTGATGCAACCGGTGCATATCGATCCGGAGTCGATTAGGCCGCCGAAGAGAAGGAACGTGAAGATATCGAAGGATCCGCAGAGCGTAGCGGCGAGGCATAGAAGGGAAAGGATAAGTGAAAGGATAAGGATATTGCAGAGATTAGTACCTGGTGGAACTAAAATGGACACTGCTTCTATGTTAGATGAAGCTATACATTATGTGAAGTTTTTGAAGAAACAGGTTCAGAGTTTGGAACAAGCTGGGGCTAGTAATAGATCATCACACATTGGTGCTGCTGCTGGTGTTATCAACAGTTTCAATGTCATGAATTATTCTTCTGCTTTGATGATGAAGGGTTGTCAACCTTTTCAAATGGTGGGGTCCACTTCTAAACAATTGCTTAGCTAA 660 0.403 MDMISMMMQMEKFPDNYSEPSTYQEIINGTSTTNTAPLFNLSPQTLTDPFLHSNVNFNNTIQQQSPLYNPNSSDKKNSMAAMREMIFRIAVMQPVHIDPESIRPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEQAGASNRSSHIGAAAGVINSFNVMNYSSALMMKGCQPFQMVGSTSKQLLS* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2023 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 161 IPR011598 GO:0046983
Psa4g2023 219 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 22 211 - -
Psa4g2023 219 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 22 211 IPR045843 GO:0003700|GO:0006355
Psa4g2023 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 172 IPR036638 GO:0046983
Psa4g2023 219 SMART finulus 118 167 IPR011598 GO:0046983
Psa4g2023 219 Coils Coil 151 171 - -
Psa4g2023 219 CDD bHLH_AtIND_like 113 169 - -
Psa4g2023 219 Pfam Helix-loop-helix DNA-binding domain 121 161 IPR011598 GO:0046983
Psa4g2023 219 Gene3D - 111 180 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2023 Psa-Chr4 153706231 153708877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2023 6 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 57.576 6.46e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g2023 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2023 - - gmx:100800816 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2023 4 153706231 153708877 Psa4g2023 4 153706231 153708877 ECH