Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2021 ATGGATTGGGTACGAGGAGAATCACTTGGTAGAGGAAGTTTTGCAACTGTTCATTTACTCATACCCAAAGTTAACTCAAATTCTACTCTATTTTCTTCTCCGACAGCCGTCAAAACATCCGAGGTTTCAACCTCGTATTCCCTCAAAAACGAGAGACAGGTTCTCGATCGTTTAGGTTCTTGTCAACAAATCATTAGCTGTTTCGGAGATGATTATACCTTCGAGAATGGCCACGAGTATTACAATCTGTTTCTCGAATATGCTTCTGCCGGTACTCTCGCCGATCAAGTTAAATTACACGGTGGCCGGATTCCAGAACAAAACATTCGCGGTTACACGAGGTCAATTGTGGAGGGTCTTAACCATATTCATAGCAATGGATTCGTTCATTGTGACGTTAAGCTTCAAAACATTCTTGTATTCCGCGATGGTGAAATCAAAATCGCTGATTTTGGTCTTGCGAAAAAAACAGGGGAAGAACAGAGTGTTAATGAGAGATTTGAATGCAGGGGAACTCCACTGTTTATGTCGCCGGAATCGGTGAACTACGGAGAAAATGAGTCTCCGGCGGATATTTGGGCACTTGGATGTGCGGTGGTGGAGATGGTGACTGGAAAACCAGCTTGGAATGTGGAGAAAGATTCATCTATGTGGTCCTTGTTGCTTAAAATTGGTGCCGGAGAAGAATCACCGATGATACCCGAAGATTTATCAAAAGAAGGAAAAGATTTTGTTGAGAAATGTTTTGTTAAGGATCCAAGAAAAAGATGGACGGCTGAGATGTTTTTGAATCATCCTTTTATTGAAGAAGGGAAGAATGCTAATGACTCATCACCGAGAAATCACTTTGATTTTAGTGATTGGGTTTCAAGTGTTGGTGATTCAACTCCAAGTTTCCCGGAATTTGAGGAATCGTGTCAATGGGATTTTGTTTCTTGTTCTTGTTCGGTATCAAATCGACTTCGGCAGCTTGTGACGGTTGAGATGCCAGTTAGTTGGTCGGAATCAGATAGTTGGATTAGTGTGAGGTGA 1032 0.4196 MDWVRGESLGRGSFATVHLLIPKVNSNSTLFSSPTAVKTSEVSTSYSLKNERQVLDRLGSCQQIISCFGDDYTFENGHEYYNLFLEYASAGTLADQVKLHGGRIPEQNIRGYTRSIVEGLNHIHSNGFVHCDVKLQNILVFRDGEIKIADFGLAKKTGEEQSVNERFECRGTPLFMSPESVNYGENESPADIWALGCAVVEMVTGKPAWNVEKDSSMWSLLLKIGAGEESPMIPEDLSKEGKDFVEKCFVKDPRKRWTAEMFLNHPFIEEGKNANDSSPRNHFDFSDWVSSVGDSTPSFPEFEESCQWDFVSCSCSVSNRLRQLVTVEMPVSWSESDSWISVR* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2021 343 CDD STKc_MAPKKK 2 268 - -
Psa4g2021 343 ProSiteProfiles Protein kinase domain profile. 3 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g2021 343 Pfam Protein kinase domain 5 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g2021 343 SUPERFAMILY Protein kinase-like (PK-like) 3 307 IPR011009 -
Psa4g2021 343 Gene3D Transferase(Phosphotransferase) domain 1 2 296 - -
Psa4g2021 343 SMART serkin_6 3 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g2021 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Psa4g2021 343 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 309 - -
Psa4g2021 343 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 309 - -
Psa4g2021 343 ProSitePatterns Protein kinases ATP-binding region signature. 9 38 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2021 Psa-Chr4 153178141 153179365 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2021 1 343 MAP Kinase Kinase Kinase AT4G36950 52.542 5.21e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Psa4g2021 Pkinase 6.3e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2021 - - aprc:113858661 501.901