Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2016 ATGAGCCAACAAGGGGAAAATGAAGAAATTTACAACTCCATGGCTAACATTGATGAAAGTGATGCTATCTCAACTTCATCAGAAAGAGAAACAACATTGCGGTTTTCTTCTGTCTCAAGTTCAATGAGTGCAACAAGAATGGAAGAAATTTTGAATATAAATAATGTTGAAACATATGTAACAAGAGAGATTCAAAGTCATAGGAGACTTGTAAGATCTGAGATGGTTCACCGTAATCCAGTGGGAACTATGATTCCAGTTGGCAGTGACAATGGTGAACAACAATCCCTTGTTGTCCCAACTCATGATCCACAAATGATAAGAACATTGGTGCAGAACAATAACCGAATTGCTTTTCACACTGCAATTGAACGTCTACATTCTGACGAACTTCTAAGACCTCAGGATATAAGGGTCCTCCACAGTCAGCTTATGTTACATTTCAATGAGTGGCAGTGGATGAAGAAAATGAGAGGAGGGCTTACTGGGGAAGAAATAAGAAAGGCCATTAGCGGTAAAATCTTTGAGGAGACTTCACAAATTAAAGAATTATGTTGCATTTGTCAGGAGGAATATATGAATGGAGAAGAATGTGGAAAGCTGGATTGTGAACACTATTTTCACATGAAGTGCATTAAGAAGTGGCTTACAGAAAAAAATATGTGCCCTCTTTGCAAGTGTATGGGATTAGCTTTTGTTGATGAACTAATTGATGGATGA 720 0.3778 MSQQGENEEIYNSMANIDESDAISTSSERETTLRFSSVSSSMSATRMEEILNINNVETYVTREIQSHRRLVRSEMVHRNPVGTMIPVGSDNGEQQSLVVPTHDPQMIRTLVQNNNRIAFHTAIERLHSDELLRPQDIRVLHSQLMLHFNEWQWMKKMRGGLTGEEIRKAISGKIFEETSQIKELCCICQEEYMNGEECGKLDCEHYFHMKCIKKWLTEKNMCPLCKCMGLAFVDELIDG* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2016 239 SUPERFAMILY RING/U-box 184 228 - -
Psa4g2016 239 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Psa4g2016 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 177 231 IPR045191 GO:0061630
Psa4g2016 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE 177 231 - -
Psa4g2016 239 Pfam Ring finger domain 185 226 IPR001841 -
Psa4g2016 239 SMART ring_2 185 225 IPR001841 -
Psa4g2016 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 229 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2016 Psa-Chr4 152829155 152838834 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2016 160 230 C3H Transcription Factor Family AT2G15530 46.154 3.28e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2016 - - lang:109350901 89.3521