Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2015 ATGGCTAACATTGATGAAAGTGATGCTATCTCAACTTCATCGGAAAGAGAAACAACATTGCGGTTTTCTTCTGTCTCAAATTCAATGAGTGCAACAAGAATGGAAGAAATTTTGAATATAAATAATGTTGAAACATATGTAACAAGAGAGATTCAAAGTCATAGGAGATTTGTAAGATCTGAGATGGTTCACCGTAATCCAGTGGGAACTATGATTCCAGTTGGCAGTGACAATGGTGAACAACAATCCCTTGTTGTACCAACTCATGATCCACAAATGATAAGAACATTGGTGCAGAACAATAACCGAATTACTTTTCACACTGCAATTGAACGTCTACATTCTGGCGAACTTCTAAGACCTCAGGATATAAGGGTCCTCCACAATCAGCTTATGTTACATTTCAATGAGTGGCGGTGGATGAAGAAAATGAGAGGAGGGCTTACTGGGGAAGAAATAAGAAAGGCCATTAGCTGTAAAATCTTTGAGGAGACTTCACAAATTAAAGAATTATGTTGCATTTGTCAGGAGGAATATATGAATGGAGAAGAATGTGGAAAGCTGGATTGTGAACACTATTTTCACATGAAGTGCATTAAGAAGTGGCTTACAAAAAAGAATATGTGCCCTCTTTGCAAGTGTATGGGATTAGCTATTGTTGATGAACTAATTGATGGCTGA 681 0.3744 MANIDESDAISTSSERETTLRFSSVSNSMSATRMEEILNINNVETYVTREIQSHRRFVRSEMVHRNPVGTMIPVGSDNGEQQSLVVPTHDPQMIRTLVQNNNRITFHTAIERLHSGELLRPQDIRVLHNQLMLHFNEWRWMKKMRGGLTGEEIRKAISCKIFEETSQIKELCCICQEEYMNGEECGKLDCEHYFHMKCIKKWLTKKNMCPLCKCMGLAIVDELIDG* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2015 226 ProSiteProfiles Zinc finger RING-type profile. 172 213 IPR001841 -
Psa4g2015 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 164 218 IPR045191 GO:0061630
Psa4g2015 226 MobiDBLite consensus disorder prediction 1 26 - -
Psa4g2015 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE 164 218 - -
Psa4g2015 226 Pfam Ring finger domain 172 213 IPR001841 -
Psa4g2015 226 SMART ring_2 172 212 IPR001841 -
Psa4g2015 226 SUPERFAMILY RING/U-box 171 215 - -
Psa4g2015 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 216 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2015 Psa-Chr4 152794812 152796316 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2015 147 217 C3H Transcription Factor Family AT2G15530 46.154 4.54e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2015 - K22753 lang:109350901 90.1225