Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2010 ATGCCTATCTCATATAAAAACTCACGATTCCCTTGCTTTGATTTAGAAGAAAGTTGCTTCACTGCTATTAATGTTCCATTGGGTAAACACCCCTTGTACACGGGACCAAACCCTCCTTCTCCAATCTTATTGGAAACATCAAAGTTATTTGTGGCTGCTTCGATTTGTCTTATGGCTGTTGCTGGTCTTGTTGGTAATGAGAAAATGAAGGCTAGCACCAATGTTAGGCATATTATCCTTCCTTGTAATAGTACTGCCAGGGCTCAAGTTATCCCTGATATTATTCGCTGTTATAGCAGTGGTGGCCGGACAATTATATTTGCAGAGAAAAAGGAGTCTGCTTCCGAGTTTGCTGGATTGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATTCAGCAGTCACAGCGTGAGATTACATTGAAAGGTTTTAGGTCTGGTAAATTCTTGACATTGGTGGCCACCAATGTGGCAGCCAGGGGTCTTGACATCAATGATGTTCAGTTGATTATCCAGTGTGAGTCTCCCCGGGATGTAGAAGCATATATTCATCGGTCTAGACGTACAGGAAGAGCTGGCAACACTGGAGTTGCTGTGATGCATTATGATCCAAGAAGGTCAAATATATCTAAAATCGAAAGAGAAGCAGGTATTAAATTTGAACACGTATCTGCTCCTCAGCCTGATGAAATTGCCAAAGTTAATGGCGGGGAAGCGGCTGAATTGATTTCTGATGTGTCTGATAGTGTGATTCCTTCATTCAAAGCTGCTGCTGAGGAACTATTGAACAACTCTGGTTTAACAGCTGTTGAGTTACTTGCAAAAGCTCTTGCCAAGGCTGAGGATAAGGTTGACGGGGTGCAAGGTCTTGCTCTAACTGCAGATGGACAGGGTGCTGTTTTTTTGATGTACCAGTCAAGGACTTGGATGCATTTCTTGTCGGTCAGAAGAATGCTGTCAATGTAA 963 0.432 MPISYKNSRFPCFDLEESCFTAINVPLGKHPLYTGPNPPSPILLETSKLFVAASICLMAVAGLVGNEKMKASTNVRHIILPCNSTARAQVIPDIIRCYSSGGRTIIFAEKKESASEFAGLLPGARALHGDIQQSQREITLKGFRSGKFLTLVATNVAARGLDINDVQLIIQCESPRDVEAYIHRSRRTGRAGNTGVAVMHYDPRRSNISKIEREAGIKFEHVSAPQPDEIAKVNGGEAAELISDVSDSVIPSFKAAAEELLNNSGLTAVELLAKALAKAEDKVDGVQGLALTADGQGAVFLMYQSRTWMHFLSVRRMLSM* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2010 320 Gene3D - 71 286 IPR027417 -
Psa4g2010 320 Pfam Helicase conserved C-terminal domain 92 192 IPR001650 -
Psa4g2010 320 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 59 262 - -
Psa4g2010 320 SMART helicmild6 115 192 IPR001650 -
Psa4g2010 320 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 89 231 IPR001650 -
Psa4g2010 320 CDD SF2_C_DEAD 75 198 - -
Psa4g2010 320 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 59 262 - -
Psa4g2010 320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 228 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2010 Psa-Chr4 152467906 152469069 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2010 126 230 Eukaryotic Initiation Factors Gene Family AT3G19760 38.095 1.24e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2010 K16911 - vvi:100258263 365.155