Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2008 ATGCAAGATCTTCTGGAATTGTCAGAGGAATTTGCTTTGGTGCGTTATCCTGATCAAGTGGCTCTAGAGAGGTTGTTTAGAGTTGATGATATAAGAGTCGGTGCCACTTCTCGAAAGGCAATTCCTGCCCTAGTTGATCTTCTCAAACCAATTCCGGGTCGCCCAGGGGCACCATTTTTAGCTCTCGGAATTTTGACTCAGCTTGGCAGAGATTGTCCGTCAAACAAGACTGTAATGGTAGAATCTGGGACTTTAGAGACCCTTACAAAGTATCTTTCCTTTGGTCCACAAGATGCAACCGAAGAAGCTGCTACAGATCTACTAGGAATTCTCCTTAGTAGTGCTGATATACGAAAACGTGACTCTGCATTTGGTGTTGTTAACCAACTTATAGCTGTCCTACGTTTAGGAGGAAGAGCTGCAAGGCTTAGTGATGCAAAATCATTGGAAAGTTTATTTTCTGCTGACCACATTAGAAATGCTGAGATTGCTCGACAAGCTATTCAACCCTTGGTAGAAATTCTTAACACTGGTTCAGAAAGGGAGCAACATGTTGCAATTGCTGCATTGGTTGGGTTATTGAGTGAAAACCCATCTAAAGCACTTGCTGTTGCAGATGTTGAAATGGATGCAGTGGATGTTCTTTATAGGATCCTTTCGTCGAATTGTTCAATTGACCTGATAGGGGATGCTGCTGAGTTATGTTGTGCTCTTTTTGGAAATACAAGGATTCGGTCCACAACGGCTGCTACGCGATGTGTTGAACCACTGGTCGCACTCCTTGCAACCGAGTTTAGTCCGGCTCATCATTCAGTTGTTCGGGCACTGGATAGGCTCGTTGATGATGAGCAAGTGGCTGAACTAATTGCCACACACAGTGCAATTGTCCCTCTGGTTAGTCTACTGTCTGGTAGAAACTTTGTACTTCATGAGGCCATTTCCAGAGCTCTGGTCAAGTTAGGAGAAGACAAACCTGCTTGTAAAATGGAAATGGTAAAAGCTGGAGTCATTGAAAGTATACTGGACATCTTACATGAAGCACCTGATTTTTTGTGTGCAGCTTTTGCAGAACTGTTGCGTATATTAACAAATAATGCTACCATAGCTAAAGGACCATTGGCCGCCAAAGTTGTTGAACCCTTGTTTTTTGTTGTAAACTAG 1161 0.4315 MQDLLELSEEFALVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPGRPGAPFLALGILTQLGRDCPSNKTVMVESGTLETLTKYLSFGPQDATEEAATDLLGILLSSADIRKRDSAFGVVNQLIAVLRLGGRAARLSDAKSLESLFSADHIRNAEIARQAIQPLVEILNTGSEREQHVAIAALVGLLSENPSKALAVADVEMDAVDVLYRILSSNCSIDLIGDAAELCCALFGNTRIRSTTAATRCVEPLVALLATEFSPAHHSVVRALDRLVDDEQVAELIATHSAIVPLVSLLSGRNFVLHEAISRALVKLGEDKPACKMEMVKAGVIESILDILHEAPDFLCAAFAELLRILTNNATIAKGPLAAKVVEPLFFVVN* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2008 386 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 1 385 - -
Psa4g2008 386 Gene3D - 12 210 IPR011989 -
Psa4g2008 386 SUPERFAMILY ARM repeat 28 365 IPR016024 -
Psa4g2008 386 Gene3D - 211 363 IPR011989 -
Psa4g2008 386 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 1 385 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Psa4g2008 386 SMART arm_5 72 113 IPR000225 GO:0005515
Psa4g2008 386 SMART arm_5 241 281 IPR000225 GO:0005515
Psa4g2008 386 SMART arm_5 155 195 IPR000225 GO:0005515
Psa4g2008 386 SMART arm_5 324 364 IPR000225 GO:0005515
Psa4g2008 386 SMART arm_5 282 322 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2008 Psa-Chr4 152445452 152446612 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2008 68 204 U-box Gene Family AT5G42340 29.197 1.63e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2008 - - mtr:MTR_8g091470 657.136