Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2003 ATGCTTCGTTTAATAACTCTCTTCTTTTACCTCTTCTTCACCTTCACACTATCTTCCTCATCAAACTCAACCTTTTCTCAAGACGCTGTTTCCCTACTCTCGTTCAAGCATAACGCTGACCAAAACGACAAACTCCTTTACACACTAAACGAACCCTACGACTACTGCGAGTGGCAAGGAGTCAAATGTGCACAAGGCAGAGTCGTACGCTTCGTCGTTCAAGGATTCGGCTTAGCCGGTTTTTTCCCTCCAGACACCCTAACCCGCCTCGACCAACTTCGAGTCTTGAGTCTCCGTAACAACTCCTTATTCGGACCCATTCCGGATCTCTCACCGCTTATCAACCTTAAATCACTCTTCCTCGACCGGAATAACTTCTCCGGTTCTTTCCCTCCTTCTATTCTCTTCCTCCACCGTCTCATTACTCTTTCCCTCTCTCATAACAACCTCACCGGTTCACTTCCGGTTCAGTTAACTCTCCTCGACCGTCTCATTTCGCTTCGGCTTGACTCCAACTCGTTCACTGGTCCTCTTCCTCCACTCAACCAAACCGAGTTAAAAATATTTAACATCTCCGCTAATAACCTCACCGGTCCGGTTCCTATCACTGAAACTCTGACACGGTTCAAACCGGCGTTGTTTTCCGAGAACCCGGGTCTTTGCGGTGAGATTATTCACAAACAATGCGGTCATCGTTCTAGATTCTTCGGTTCATCAAACGCCACCGTTTCTTCCTCAGCACCGCTGAGTCAGAGCGAGGAATCGCAGGGTATCGTGGTGGTCCCTTCGCCTTCTTCCAAGAAAAGGAACCATAAGAAAATCGGTTTGGTTTTCGGCTTAATAGTTGGTGTTGCGATTCTCACAGTTTTTACGGTGATTATAATAGGGTTAGTTAGAAAACAGAACACCGGGGCGAAATCGAAATCCGAATCCTCGGCGTCGGAAACTCTACCGGCGGTTGCGGTATCCGAAGTGAGAACCGAAGTGGAAACCGTTACGAAGGTGAAGATGATGGAGGAAGCGCATAGGAGTGGGAAGTTGGTGTTCTGCTGTGGGGAGGTGCAGGAGTATACGCTGGAGCAGCTGATGAGAGCTTCTGCGGAGCTTTTGGGACGAGGGAGTGTGGGGACCACTTACAAGGCGGTAATGGATTCGAATGTGATATTAACGGTGAAGAGATTGGACGCCGGAAAAAGTGGTGTGACAAGTGGTGAAGAATTTCAGAAGCATATGGAGATTGTGGGTAGACTTGGTCATCCTAATTTGGTTCCTGTGAAGGCTTTCTTCCAAGCGAAAGGAGAGAGGCTTGTTATCTATGATTTTCAACCTAATGGAAGCCTCTTCAATCTTGTTCATGGTTCAAGATCGGCGAGAGCCAAGCCGTTGCATTGGACATCATGCTTAAAAATAGCAGAAGATGTAGCTCATGGACTTGCTTATATACATCAAGTTTCGCCTTTGATTCATGGAAATCTAAAATCCTCTAATGTTCTTCTTGGAGGAGACTTTGAAGCTTGCATAACCGACTATTGTTTGGCCTTCCTCACCGATTCTTCAGTCATTGAAGATCCTGATTCTGCAGCCTACAAAGCCCCAGAGGTTCGAAAATCTTACCGCAGGGTGAGTTCAAAGTCTGATGTGTATGCTTTTGGTGTGCTGCTGTTGGAGCTTTTGACGGGCAAGCATCCTTCCAAACATCCTTTCCTTACCCCAACGGATTTACAAGATTGGGTTAGAGCAATGAGGGATGATGATTTTAGCGAAGATAACCGGTTAGAAATGCTCACCGAGGTTGCCAGTATTTGCAGTGCGACTTCGCCAGAGCAGAGGCCAGCTATGTGGCAAGTTCTTAAGATGATACAAGGAATAAAGGATAGTATTTCGATGGAGGACACTGAACTCACTGGACTGACATAG 1917 0.4679 MLRLITLFFYLFFTFTLSSSSNSTFSQDAVSLLSFKHNADQNDKLLYTLNEPYDYCEWQGVKCAQGRVVRFVVQGFGLAGFFPPDTLTRLDQLRVLSLRNNSLFGPIPDLSPLINLKSLFLDRNNFSGSFPPSILFLHRLITLSLSHNNLTGSLPVQLTLLDRLISLRLDSNSFTGPLPPLNQTELKIFNISANNLTGPVPITETLTRFKPALFSENPGLCGEIIHKQCGHRSRFFGSSNATVSSSAPLSQSEESQGIVVVPSPSSKKRNHKKIGLVFGLIVGVAILTVFTVIIIGLVRKQNTGAKSKSESSASETLPAVAVSEVRTEVETVTKVKMMEEAHRSGKLVFCCGEVQEYTLEQLMRASAELLGRGSVGTTYKAVMDSNVILTVKRLDAGKSGVTSGEEFQKHMEIVGRLGHPNLVPVKAFFQAKGERLVIYDFQPNGSLFNLVHGSRSARAKPLHWTSCLKIAEDVAHGLAYIHQVSPLIHGNLKSSNVLLGGDFEACITDYCLAFLTDSSVIEDPDSAAYKAPEVRKSYRRVSSKSDVYAFGVLLLELLTGKHPSKHPFLTPTDLQDWVRAMRDDDFSEDNRLEMLTEVASICSATSPEQRPAMWQVLKMIQGIKDSISMEDTELTGLT* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2003 638 Gene3D Phosphorylase Kinase; domain 1 323 441 - -
Psa4g2003 638 Pfam Protein kinase domain 367 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g2003 638 Gene3D Transferase(Phosphotransferase) domain 1 443 635 - -
Psa4g2003 638 SUPERFAMILY Protein kinase-like (PK-like) 368 624 IPR011009 -
Psa4g2003 638 Gene3D Ribonuclease Inhibitor 25 182 IPR032675 -
Psa4g2003 638 SUPERFAMILY L domain-like 26 222 - -
Psa4g2003 638 ProSiteProfiles Protein kinase domain profile. 364 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g2003 638 PANTHER LRR RECEPTOR-LIKE KINASE 7 634 - -
Psa4g2003 638 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 634 - -
Psa4g2003 638 Gene3D Ribonuclease Inhibitor 183 232 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2003 Psa-Chr4 151351005 151355045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2003 22 631 Receptor kinase-like Gene Family AT3G50230 54.054 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Psa4g2003 Pkinase 1.1e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2003 - - gmx:100783086 870.537