Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa4g1999 | ATGTGGGATCTTAATGGTTCGCCGTCTAAGAGAAAAGACCAAGAGTCTGAAGGATGTTCTTCTCCCAAAACATCATTAGACGGAGATGAAGATAAAGCAAAAAGGGTCGGTGTTGGGGGATCTGTTTCAAATTCTAGCTCTTCTGCTATCGTAATCGAAGAAGATTCAGAAGAAGATAACAACAACAACAACAGAAGCATGGTAAAGAAAAAAAACAGCAAGATATTTGGTTTCTCTGTGACACAAGAACAAGAGCAAGAACAAGAAGAAGAAGAATCTTTAGACAGTGAAAATTTTCCTGTGACGAGAAATTTCTTTCCCATGGATCAAGAAGCTGAAAACATGGTTGTAGCATCTAGTGGCGGAAATGGAACATCTTCTTGTTCTTCTACTTTTCCTCGTGCTCATTGGGTAGGTGTGAAATTTTGTCAATCAGAAACACTTGGAAGTGGAAAATCAATGGAAGTTTCATCATCTTCGCAACCTATGAAGAAGAGTCGTAGAGGACCAAGGTCAAGAAGTTCACAGTATAGAGGAGTTACTTTTTACAGAAGAACAGGTCGATGGGAATCTCATATATGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCAGCTATTAAGTTTAGAGGAGTTGAAGCAGACATAAACTTCAACATAGAAGATTATGAAGAAGACTTGAAGCAGATGAGTAATTTGACAAAGGAAGAGTTCGTACATGTACTTCGTCGACAAAGCACTGGTTTTCCTCGAGGAAGTTCTAAATATAGAGGTGTTACATTGCACAAATGTGGAAGATGGGAAGCTAGAATGGGTCAATTTTTAGGAAAAAAATATGTTTATCTGGGCTTGTTTGACACAGAGGTTGAAGCTGCAAGGGCTTATGACAAAGCAGCTATAAAATGCAATGGAAAAGAGGCTGTAACTAATTTTGAACCAAGCATCTATGATAGTGAGCTTAATACTGCAGAACCAGCAAGTAGTGGAAGTGATCACAATTTGGATTTAAGTTTGGGAAATTCAAGTTCAAAGCACATGAATAACACTCAATCATTTGGGAATAACACATCAAATGTTGCAAATCATGATCAATCTAATTGGCAGAATGGGGGGAACATAAACAAGCCTAAGCTTGTGAATATTTTACCAAAACCATATAATAGACCAAACAACATGGAACCATATGGAAGAGATTTACATGGAGAGAATGAAGCACTGAGAATGCTAAGTCAAACTCATCTTCAATCTTCGTCGCCAAACGGTATTCATCGATACGGTCCCTTTCGAGATCAACCACAAGTGCTTCACAGTTTTGCACATACTAATCATCAACCACCAAATTTTCATTTTCCTAGCAGCAGCTACGGAGGCCGAGTTGGAAGCGATCTATCGTTATCAACAAACAATCATCAGCAACAACAACAACAATGGCAACCAGGATCACATTATTTATCATCTGCTGCTGCAGCATCATCAGGATTCCCACCTCAAATAAGAACACCCTCTTCACAAACTTGGCTGCACAAAAATGGCTTCCACACACTCATGAGACCCTCTTGA | 1599 | 0.394 | MWDLNGSPSKRKDQESEGCSSPKTSLDGDEDKAKRVGVGGSVSNSSSSAIVIEEDSEEDNNNNNRSMVKKKNSKIFGFSVTQEQEQEQEEEESLDSENFPVTRNFFPMDQEAENMVVASSGGNGTSSCSSTFPRAHWVGVKFCQSETLGSGKSMEVSSSSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFEPSIYDSELNTAEPASSGSDHNLDLSLGNSSSKHMNNTQSFGNNTSNVANHDQSNWQNGGNINKPKLVNILPKPYNRPNNMEPYGRDLHGENEALRMLSQTHLQSSSPNGIHRYGPFRDQPQVLHSFAHTNHQPPNFHFPSSSYGGRVGSDLSLSTNNHQQQQQQWQPGSHYLSSAAAASSGFPPQIRTPSSQTWLHKNGFHTLMRPS* | 533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa4g1999 | 532 | SUPERFAMILY | DNA-binding domain | 175 | 233 | IPR016177 | GO:0003677 | |
| Psa4g1999 | 532 | MobiDBLite | consensus disorder prediction | 66 | 83 | - | - | |
| Psa4g1999 | 532 | SUPERFAMILY | DNA-binding domain | 267 | 327 | IPR016177 | GO:0003677 | |
| Psa4g1999 | 532 | CDD | AP2 | 176 | 233 | IPR001471 | GO:0003700|GO:0006355 | |
| Psa4g1999 | 532 | SMART | rav1_2 | 176 | 238 | IPR001471 | GO:0003700|GO:0006355 | |
| Psa4g1999 | 532 | SMART | rav1_2 | 268 | 331 | IPR001471 | GO:0003700|GO:0006355 | |
| Psa4g1999 | 532 | CDD | AP2 | 267 | 327 | IPR001471 | GO:0003700|GO:0006355 | |
| Psa4g1999 | 532 | Gene3D | AP2/ERF domain | 175 | 234 | IPR036955 | GO:0003700|GO:0006355 | |
| Psa4g1999 | 532 | Gene3D | AP2/ERF domain | 267 | 326 | IPR036955 | GO:0003700|GO:0006355 | |
| Psa4g1999 | 532 | MobiDBLite | consensus disorder prediction | 151 | 177 | - | - | |
| Psa4g1999 | 532 | PRINTS | Ethylene responsive element binding protein signature | 269 | 280 | IPR001471 | GO:0003700|GO:0006355 | |
| Psa4g1999 | 532 | PRINTS | Ethylene responsive element binding protein signature | 307 | 327 | IPR001471 | GO:0003700|GO:0006355 | |
| Psa4g1999 | 532 | ProSiteProfiles | AP2/ERF domain profile. | 176 | 232 | IPR001471 | GO:0003700|GO:0006355 | |
| Psa4g1999 | 532 | MobiDBLite | consensus disorder prediction | 151 | 165 | - | - | |
| Psa4g1999 | 532 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Psa4g1999 | 532 | ProSiteProfiles | AP2/ERF domain profile. | 268 | 325 | IPR001471 | GO:0003700|GO:0006355 | |
| Psa4g1999 | 532 | PANTHER | AP2 DOMAIN TRANSCRIPTION FACTOR | 1 | 530 | - | - | |
| Psa4g1999 | 532 | Pfam | AP2 domain | 176 | 224 | IPR001471 | GO:0003700|GO:0006355 | |
| Psa4g1999 | 532 | Pfam | AP2 domain | 267 | 316 | IPR001471 | GO:0003700|GO:0006355 | |
| Psa4g1999 | 532 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 530 | - | - | |
| Psa4g1999 | 532 | MobiDBLite | consensus disorder prediction | 1 | 98 | - | - | |
| Psa4g1999 | 532 | MobiDBLite | consensus disorder prediction | 478 | 518 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa4g1999 | Psa-Chr4 | 150901169 | 150905603 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa4g1999 | 1 | 358 | AP2-EREBP Transcription Factor Family | AT4G36920 | 64.247 | 4.91e-127 | 376 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | AP2/ERF-AP2 | Psa4g1999 | AP2 | 9.2e-10 | CL0081 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa4g1999 | K09284 | - | gmx:100792442 | 665.225 |