Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1969 ATGAACTTCACCACAAAAACAACCTTTTCTCTTTCTCTTTTTCTCACACTCTTAACACTTACCATTAACCAATGTTTCTCTCTTACTAAAGACGGCGTTTTGTTGCTTTCTTTCAAAGAATCCATTCTCAACGACCCTTTATTCGTGCTTTCCAATTGGAACTATACTGACCAAACACCGTGTTCATGGAACGGTGTTTCTTGTTCCATTGTAACAACCGAAAACACAAAAAATGATACACTGTATCGTGTTACTGCTTTATCATTACCAAATTCTCAGCTTTTAGGTTTGATTCCCTCCGATCTTGGTTCCATTCAACATCTTCAAATTATTGATCTTTCTAACAATTCTCTTAACGGGTCTCTTCCATCTTCGTTTTTTCAAGCAAATTCTGAGCTTAGGTTCCTGAATTTCTCAAACAATTTGTTAACCGGGGAAATTCCAGAGTCTATAACAGAGCTTAAAAACCTTCAGTTTCTTAATTTTTCCGACAATGCTTTCACGGGAAAACTACCAAACAATCTCTCAAACATGCAGAACTTAACTGTTGCTTCGTTTAAGAACAATTACTTAACCGGTTTTCTTCCTAAGGATTTGAGAACTTTACAGATTTTGGATCTGTCTTCGAATTTGCTGAACGGGTCTTTGAGTGCTGATTTCGGCGGTGATTCCATTCGTTACTTGAACGTTTCTTACAACAAATTTTCCGGCGAAATTCCGCCGGAGTTTGCTGAGAAAATTCCGAGAAACGCTACGGTTGATCTCTCGTTTAATAACCTAACCGGCGAGATACCGGAATCCCAGGTATTTTTGAATCAGGAAACAAAATCGTTTTCTGGTAACAGTGATCTATGTGGTGAACTAACGAAAAATCCATGTTCTATTCCTTCTTCTCCTTCTTCCGAACCTAAAGCTTCTTCTCCTGCAATTGCGGCAATGCCGAAGAATTTTGACGATGATTCTCCTCCAACAGAGAATTCCGAGAAGAAACAGAGTGGTTTGAGAAAAGGAACTATCATAGGAATTGTGGTTGGAGATTTCGTCGGAATTGGAATTTTAGCTATGGTTTTCATTTACGTGTACAAGTTGAAAAGAAAAAAAGACGAAGAGAAAGAACTAAAGAACGAAGCAACTACTACAAGAAGCGAAACTTCATCGTCAAATTCAGAAACGAGAGGTTTCACGAGGTGGTCGTGTTTGAGAAAAAGAACAGAAGACGAAGAGTCCTCGGAGACTCCGAGTTCTTCAGACAGTGACGTGGAAGCAGCATCAAAAAATGTTGAAGGTGGTGAAAATCAAAAGCAAGGAGAGAACAAAACCGGGTCGGGTTCGAATACGGGTACCCTGGTTACAGTTGATGGTGAAAGAGAGCTTGAAGTTGAAACGTTACTAAAAGCTTCTGCGTATATTTTAGGAGCTACTGGTTCAAGTATAATGTATAAGGCCGTGCTTGAAGATGGAACGTCGTTAGCGGTTCGGAGAATCGGCGAAAGCGGTGTTGAACGGTTCAAGGATTTCGAGAATCAGGTTCGGGTCATAGCGAAACTGGTTCACCCGAATCTGGTTCGGGTTCGTGGCTTTTACTGGGGACACGATGAGAAACTCATTATCTATGACTATGTTCCCAATGGTTGTCTCGCCAATGTTCGTTACAGAAAAGTGGGGTCTTCACCTAGCCACTTACCGTGGGAACAACGGCTCAAGATAGCAAAAGGAGTTGCACGTGGGCTAACGTATCTCCACGAGAAGAAGCACGTGCATGGGAATTTGAAGCCAACGAATATTCTATTGGGCAATGACATGGAGCCCAAAATTGGAGACTTTGGGCTTGAGAGAATAGTAACAGGTGACACAAGTTATAAAGCTGGAGGTTCAGCACGTATTTTCGGGAGTAAGAGATCAACAACCTCACGTGATAGTTTTCAAGATGTTACACTTGGGCCTAGCCCAAGCCCAAGCCCAAGCTCAATAGGTGGTGTATCTCCTTATCATGCACCTGAGTCGCTTAGGAATTTGAAGCCTCATCCGAAGTGGGATGTGTACTCCTTTGGGGTCATGTTTCTTGAGCTTTTAACGGGTAAGATTGTGGTTTTGGATGATATGGGCCAAGGGCCCGCGGTTATCGTTGAGGATAAGAATCGGGCTTTGCGGATGGTTGACGTGGCGATTCGGGCTGATATGGAAGGGAAGGAGGAGGCTTTGTTGGGTTATTTTAAGTTAGGGTATAGTTGTGTGACTAATGTTCCTCAAAAAAGACCACAAATGAAAGAGGTGTTACAAGTTCTTGAAAAAATACCATCTACATTGTCGTATTGGTCATGA 2322 0.4186 MNFTTKTTFSLSLFLTLLTLTINQCFSLTKDGVLLLSFKESILNDPLFVLSNWNYTDQTPCSWNGVSCSIVTTENTKNDTLYRVTALSLPNSQLLGLIPSDLGSIQHLQIIDLSNNSLNGSLPSSFFQANSELRFLNFSNNLLTGEIPESITELKNLQFLNFSDNAFTGKLPNNLSNMQNLTVASFKNNYLTGFLPKDLRTLQILDLSSNLLNGSLSADFGGDSIRYLNVSYNKFSGEIPPEFAEKIPRNATVDLSFNNLTGEIPESQVFLNQETKSFSGNSDLCGELTKNPCSIPSSPSSEPKASSPAIAAMPKNFDDDSPPTENSEKKQSGLRKGTIIGIVVGDFVGIGILAMVFIYVYKLKRKKDEEKELKNEATTTRSETSSSNSETRGFTRWSCLRKRTEDEESSETPSSSDSDVEAASKNVEGGENQKQGENKTGSGSNTGTLVTVDGERELEVETLLKASAYILGATGSSIMYKAVLEDGTSLAVRRIGESGVERFKDFENQVRVIAKLVHPNLVRVRGFYWGHDEKLIIYDYVPNGCLANVRYRKVGSSPSHLPWEQRLKIAKGVARGLTYLHEKKHVHGNLKPTNILLGNDMEPKIGDFGLERIVTGDTSYKAGGSARIFGSKRSTTSRDSFQDVTLGPSPSPSPSSIGGVSPYHAPESLRNLKPHPKWDVYSFGVMFLELLTGKIVVLDDMGQGPAVIVEDKNRALRMVDVAIRADMEGKEEALLGYFKLGYSCVTNVPQKRPQMKEVLQVLEKIPSTLSYWS* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1969 773 Pfam Protein kinase domain 471 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g1969 773 MobiDBLite consensus disorder prediction 632 658 - -
Psa4g1969 773 PRINTS Leucine-rich repeat signature 108 121 - -
Psa4g1969 773 PRINTS Leucine-rich repeat signature 199 212 - -
Psa4g1969 773 PANTHER BNAC07G16060D PROTEIN 14 768 - -
Psa4g1969 773 Pfam Leucine rich repeat 107 166 IPR001611 GO:0005515
Psa4g1969 773 CDD STKc_IRAK 471 765 - -
Psa4g1969 773 Gene3D Ribonuclease Inhibitor 199 295 IPR032675 -
Psa4g1969 773 MobiDBLite consensus disorder prediction 632 661 - -
Psa4g1969 773 Coils Coil 363 383 - -
Psa4g1969 773 MobiDBLite consensus disorder prediction 415 451 - -
Psa4g1969 773 ProSiteProfiles Protein kinase domain profile. 465 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g1969 773 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 768 - -
Psa4g1969 773 MobiDBLite consensus disorder prediction 369 452 - -
Psa4g1969 773 Gene3D Transferase(Phosphotransferase) domain 1 542 770 - -
Psa4g1969 773 Gene3D Phosphorylase Kinase; domain 1 434 540 - -
Psa4g1969 773 MobiDBLite consensus disorder prediction 379 395 - -
Psa4g1969 773 SUPERFAMILY L domain-like 27 286 - -
Psa4g1969 773 MobiDBLite consensus disorder prediction 396 410 - -
Psa4g1969 773 SUPERFAMILY Protein kinase-like (PK-like) 470 766 IPR011009 -
Psa4g1969 773 Gene3D Ribonuclease Inhibitor 29 198 IPR032675 -
Psa4g1969 773 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1969 Psa-Chr4 146635215 146638793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1969 27 765 Receptor kinase-like Gene Family AT4G37250 59.342 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Psa4g1969 Pkinase 1.1e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1969 - - gmx:100784503 1090.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1969 4 146635215 146638793 Psa4g1969 4 146635215 146638793 ECH