Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1965 ATGTCTCTCTCACACCAACAATCTCCTTCCTTCCTCGACGCCCTTCTCTGTGAAGAGCAAAACTTTGAAGATGATGATTCCGATGCAACCGTCACTGATTCTGAAACCGTTTTTGATGACCCATCTGGGGCAAAGCTGCAGTCTTTGCCTTTGGTTTTGCTTAGCAATGATGTGTTTTGGGAAAGCGATGAGCTTGTTTCGTTGATTTCTAAAGAGGGTGAGACCCGTTTGTGTTGTGGGAATCTTGTTGGGGATGGATCTTTGGAAGAGATTCGTGTGGAGGCTGTCAACTGGATTTCTAAAGTTTGTGCTCATTATGGGTTTTCTACTTTGACTACTGTTCTTGCTGTTAACTACTTTGATAGATTTATTACTAGTTTGAAGTTTCAGAAGGATAAACCATGGATGACTCAGCTTACTGCTGTTGCTTGTTTGTCTCTTGCTGCTAAAATGGAGGAAACCCATGTGCCACTTCTTTTAGATTTTCAAGTTGAGGAATCTAGATTTGTGTTTGAAGCTAAGACTATACAGAGAATGGAGCTTTTGGTGTTGTCTACTTTGAAATGGAGGATGCATCCGGTGACACCAATTTCCTTCTTTGAACACATTGTTAGAAGGCTTGGTTTGAAGAGCCGTTTGCACTGGGAGTTTATGTGGCGTTGTGAGAGGGTTCTTCTTCATGTCATTGCTGATTCAAAAGTTATGATGAGTTATCTTCCTTCTACATTGGCCGCTGCTACAATGATCCATGTAATTAAAGAGATTGAACCATTTAATGCAACTGAGTACATTAATCAGCTATTGGGTTTACTAAAGATTAGTGAGGAACAAGTGAACCAATGCTACAAGCTTATGCTGAAGCTATTAGTTTCCGATGATGGCATTTATAGTCTTCACCAGAAACGGAAGCGAGTATCTGAACCAAGTAGCCCGGGTGGTGTCATTGACGCTTCTTTCAGCTGTGATAGCTCAAATGATTCATGGACCGTGGCATCGTCTGTTTCTCTTTCAGTGCAGCCGATGTTTAAGAGGAGCAGAGCTCAGGACCAGCAGATGCGACTTCCTTCTGTGAATCGTGTGTCTATCGATGTCCTTAATAGCCCTCGTTAA 1110 0.4216 MSLSHQQSPSFLDALLCEEQNFEDDDSDATVTDSETVFDDPSGAKLQSLPLVLLSNDVFWESDELVSLISKEGETRLCCGNLVGDGSLEEIRVEAVNWISKVCAHYGFSTLTTVLAVNYFDRFITSLKFQKDKPWMTQLTAVACLSLAAKMEETHVPLLLDFQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKSRLHWEFMWRCERVLLHVIADSKVMMSYLPSTLAAATMIHVIKEIEPFNATEYINQLLGLLKISEEQVNQCYKLMLKLLVSDDGIYSLHQKRKRVSEPSSPGGVIDASFSCDSSNDSWTVASSVSLSVQPMFKRSRAQDQQMRLPSVNRVSIDVLNSPR* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1965 369 CDD CYCLIN 92 184 IPR013763 -
Psa4g1965 369 Gene3D - 89 192 - -
Psa4g1965 369 SUPERFAMILY Cyclin-like 195 296 IPR036915 -
Psa4g1965 369 Gene3D - 193 283 - -
Psa4g1965 369 PANTHER CYCLIN-D3-2 6 353 - -
Psa4g1965 369 Pfam Cyclin, C-terminal domain 194 291 IPR004367 -
Psa4g1965 369 Pfam Cyclin, N-terminal domain 89 191 IPR006671 -
Psa4g1965 369 PANTHER CYCLINS 6 353 IPR039361 -
Psa4g1965 369 SMART Cyclin_C_2 194 323 IPR004367 -
Psa4g1965 369 SMART cyclin_7 97 185 IPR013763 -
Psa4g1965 369 SUPERFAMILY Cyclin-like 59 192 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1965 Psa-Chr4 146344264 146346827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1965 12 359 Core Cell Cycle Gene Families AT5G67260 52.394 1.19e-113 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1965 K14505 - gmx:100785030 575.089