LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa4g1949	ATGGGTCGGTTTAATGTTATTCTTGTGTTGTCACTCGCATTAACGTTGTGTCTTGTTCCTTATACATGCTTGGCTCAGCTTAGTCCAAACCATTACGCTAACATTTGTCCAAATGTTCAATCCATTGTTAGATCAGCCGTTCAGAAGAAATTTCAGCAGACTTTTGTAACCATTCCGGCTACTCTCCGTCTCTTCTTTCACGATTGCTTTGTCCAGGGTTGTGACGGTTCAGTTTTGGTGGCATCGAGTGGAGGTAACCAAGCGGAGAAGGATAACGCGGATAATTTGTCATTGGCTGGTGATGGATTTGATACAGTTATTAAAGCGAAAGCGGCGTTAGATGCTGTTCCGCAGTGTTGTGGTGATGATAAGGTAATAATAATAATAAGGGAAACTTTGCAGGCTGGTGGACCATCTTACACAGTTGAATTGGGAAGATTTGATGGGTTGGTTTCAAGATCTTCAGATGTAAATGGGAGGTTGCCTCAGCCAGGGTTCAATTTGAACCAGCTGAATAGTCTATTTGCTAGCAATGGACTTACTCAAACAGACATGATTGCTCTCTCAGGTGCACACACTCTTGGATTCTCTCACTGCGACAGATTCTCCAACAGAATCTTCAACTTCAACAACCAAAGTCCAGTTGACCCAACATTGAACAAACAATACGCAACCCAGTTACAACAAATGTGTCCTAGAAACGTTGATCCAAGAATAGCCATCAACATGGACCCAACAACTCCAAGAACATTCGACAATGCTTATTACCGGAATCTTCAACAAGGAAAAGGTTTATTCACTTCAGACCAAATCCTCTTCACTGATACAAGATCTAGAGCAACTGTTAATTCTTTTGCTTCTAGTGGTAACGTTTTCAACTCCAATTTTATTACTGCTATGACTAAATTGGGCCGTATTGGTGTTAAAACTGCGAGGAATGGGAAGATTCGTAGTGATTGTTCTGTGCTTTGA	972	0.4146	MGRFNVILVLSLALTLCLVPYTCLAQLSPNHYANICPNVQSIVRSAVQKKFQQTFVTIPATLRLFFHDCFVQGCDGSVLVASSGGNQAEKDNADNLSLAGDGFDTVIKAKAALDAVPQCCGDDKVIIIIRETLQAGGPSYTVELGRFDGLVSRSSDVNGRLPQPGFNLNQLNSLFASNGLTQTDMIALSGAHTLGFSHCDRFSNRIFNFNNQSPVDPTLNKQYATQLQQMCPRNVDPRIAINMDPTTPRTFDNAYYRNLQQGKGLFTSDQILFTDTRSRATVNSFASSGNVFNSNFITAMTKLGRIGVKTARNGKIRSDCSVL*	324

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Psa4g1949	323	ProSitePatterns	Peroxidases proximal heme-ligand signature.	184	194	IPR019793	-
Psa4g1949	323	ProSiteProfiles	Plant heme peroxidase family profile.	26	323	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Psa4g1949	323	PANTHER	-	1	323	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Psa4g1949	323	Pfam	Peroxidase	43	288	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Psa4g1949	323	Gene3D	-	30	322	-	-
Psa4g1949	323	PRINTS	Haem peroxidase superfamily signature	58	72	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Psa4g1949	323	PRINTS	Haem peroxidase superfamily signature	136	148	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Psa4g1949	323	PRINTS	Haem peroxidase superfamily signature	184	199	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Psa4g1949	323	PRINTS	Haem peroxidase superfamily signature	244	259	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Psa4g1949	323	PANTHER	PEROXIDASE	1	323	-	-
Psa4g1949	323	CDD	secretory_peroxidase	26	322	IPR033905	GO:0004601\|GO:0042744
Psa4g1949	323	SUPERFAMILY	Heme-dependent peroxidases	26	322	IPR010255	GO:0004601\|GO:0006979\|GO:0020037
Psa4g1949	323	Gene3D	Peroxidase, domain 2	162	303	-	-
Psa4g1949	323	PRINTS	Plant peroxidase signature	36	55	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Psa4g1949	323	PRINTS	Plant peroxidase signature	60	80	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Psa4g1949	323	PRINTS	Plant peroxidase signature	101	114	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Psa4g1949	323	PRINTS	Plant peroxidase signature	136	151	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Psa4g1949	323	PRINTS	Plant peroxidase signature	183	195	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Psa4g1949	323	PRINTS	Plant peroxidase signature	242	257	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Psa4g1949	323	PRINTS	Plant peroxidase signature	258	275	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Psa4g1949	323	PRINTS	Plant peroxidase signature	298	311	IPR000823	GO:0004601\|GO:0006979\|GO:0020037

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa4g1949	Psa-Chr4	144368331	144370151	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa4g1949	1	320	Peroxidase	AT5G67400	62.769	3.03e-152	428

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa4g1949	K00430		-	gmx:100817540	500.36

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa4g1949	4	144368331	144370151	Psa4g1949	4	144368331	144370151	ECH