Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1936 ATGACCGATACGAAAATCCCCAAAAACCTAACCTCCCAAACCGTTTCCCCTCACCCACCCATAACCCTCACACATATAAACCAACGCAAATCCAACTTCTCTCACAACAAAATCTCAAACGCTCCACCACACTCCCAACACCAAAACCTTCTCCCCCCTAAACCAATGGATCGGATCAAAGGTCCATGGAGCCCCGAAGAAGACGATGCCCTAAAGAATCTCGTCGAGAGACACGGCCCTCGAAACTGGTCACTCATCAGCCGTGCTATCCCCGGCCGGTCTGGTAAATCGTGCCGCCTTCGTTGGTGTAATCAGCTTTCTCCTCAAGTTGAGCATCGGGCTTTTACACCTGAAGAAGATAGTCTCATAATCAGAGCCCATGCCCAGGTTGGTAACAAATGGGCCACAATAGCCCGATTACTCTCCGGCCGAACTGATAACGCTATCAAAAACCACTGGAACTCAACTCTTAAGCGTAAGTGTTCTTCCTTCATGGCTTCCGACGATCCATCCTTTAACCCTCAGCCGCTCAAGCGCTCCGCCAGCGTCGGTGCGCCGGGGAGTCCGTCCGGCTCTGATTTAAGCGACTCCGGAAATCACTTCTTCCGTCCTGTTCCGGTTCCGGTTCGATTACCTATCGAAACAACATCGGAACCAGAACAGGAGGAAGATGACGGTCCTTTAACCTCGCTGTCGCTCTCTCTTCCAGGCGTGGATACATCAGATGCGGTGAACCGTTCTGCGGCGGTGGTGCCGATTAGTTCTTCTCCTTCTCCGATAACTGCTGTAACGGCTTCTGTGGCGGCGAAAGTTTCACAAGAAGTTGGAATCGGAGCGTTGAATTTGAGTGGAGAATTTATGGCGGTTATGCAGGAGATGATAAAGAATGAAGTGAGGAGTTACATGGAAGAGCGTAATGGAATGTGTTTTCAGGGTGTGGATAGGCTCAGAAACGTTTCTGCGAAACCAATTGGGATTAACAGGGTTGATTCCTAA 996 0.503 MTDTKIPKNLTSQTVSPHPPITLTHINQRKSNFSHNKISNAPPHSQHQNLLPPKPMDRIKGPWSPEEDDALKNLVERHGPRNWSLISRAIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDSLIIRAHAQVGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSFMASDDPSFNPQPLKRSASVGAPGSPSGSDLSDSGNHFFRPVPVPVRLPIETTSEPEQEEDDGPLTSLSLSLPGVDTSDAVNRSAAVVPISSSPSPITAVTASVAAKVSQEVGIGALNLSGEFMAVMQEMIKNEVRSYMEERNGMCFQGVDRLRNVSAKPIGINRVDS* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1936 331 ProSiteProfiles Myb-like domain profile. 107 157 IPR001005 -
Psa4g1936 331 PANTHER MYB PROTEIN-RELATED 55 304 - -
Psa4g1936 331 Pfam Myb-like DNA-binding domain 63 122 - -
Psa4g1936 331 SUPERFAMILY Homeodomain-like 57 153 IPR009057 -
Psa4g1936 331 MobiDBLite consensus disorder prediction 168 199 - -
Psa4g1936 331 CDD SANT 62 104 IPR001005 -
Psa4g1936 331 Gene3D - 113 180 - -
Psa4g1936 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 110 IPR017930 -
Psa4g1936 331 PANTHER MYB TRANSCRIPTION FACTOR 55 304 - -
Psa4g1936 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 161 IPR017930 -
Psa4g1936 331 Gene3D - 59 111 - -
Psa4g1936 331 SMART sant 111 159 IPR001005 -
Psa4g1936 331 SMART sant 59 108 IPR001005 -
Psa4g1936 331 ProSiteProfiles Myb-like domain profile. 55 106 IPR001005 -
Psa4g1936 331 CDD SANT 114 157 IPR001005 -
Psa4g1936 331 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1936 Psa-Chr4 141547659 141549890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1936 54 302 MYB Transcription Factor Family AT4G37260 55.072 4.72e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa4g1936 Myb_DNA-bind_6 7.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1936 K09422 - gmx:100806145 339.732