Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1929 ATGGTGGTTGTTGGATTTTCAAATGGTGTGTTTGCGTTGTATCAGATGCCGGATTTCGTGTGCATTCATATGATGTCCATATCAAAAGAGAAGATCACCACTGCTTTCTTTAATGACCTTGGAAATTGGTTGTCTTTTGGTTGTCCCAAACTGGGTCAGCTCCTTGTGTGGGAGTGGCGGTCTGAGAGTTATATTTTGAAGCAGCAGGGTCATTACTTTGATGTCAATTATGTGGCATATTCGTCGGACTCTCAACTCCTTGCTACCGGAGCAGATGATAATAAAGTGAAGCTAGCTTGCAGTACATTGGATGGGCAAATTCATTTTTGGGATCCAATAGATGGTGTACTGATGTATACAATTGAAGGTTCTAGAGATATTGCTGGAGGTCGTCTTATGACTGACTGTAGAACATTTGCTAACTCAAGTACCAGGAAGTGCTTCACAACCTTGTGTTATTCAGCTGACGGAAGCTACATATTAGCCGGGGGCAGTAGCAGATATGTCTGCATGTATGATGTTTCCGATCAGGTTTTGTTGCGACGCTTCCAGATAACTCATAATCTTTCATTAGATGGTGTGCTTGACTTTTTAAACTCAAAGAATATGACCGAAGCTCGCCCTCTAGATTTGATTGATGATTATAACAGTGACATTGAAGAAGACGAGGCCACGAGTGCATTGGACTCCGAGTCAGAAAAGCTGGTTCAAGAAGCTCTTTATAGGTTCATGATTGGTAGAACAACTCTTGTAATCGCGCATCGACTATCTACTATTTGTAAAGCGGACCTTGTCGCTGTACTTCAGCATGGACGTGTTTCTGAAATCGAAACTCACGACGAGCTCTTTGTTAAAGGGGAAAATGGAGTTTATGCCAAGCTTATCAGAATGCAGGAGACGGAAAATGAAAGTTCAACAAGCAATGCCAGAAAAAGTAATGCAAGGCCTTCAAGTGCTAGGAATTTTGCCACTGTCTTAAAGAAAATGTTCATGTCGGGTTTCTCTGGTGACTTAGAATATGCTCATGCTAAGGCCACACAACTAGCTGGGGAGGCTATAGCCAATGTAGCAGGACTACTGCAACACATGGCACACAAAATCAATTCGAGTCAAAAACGCATCCTATTTTCATCTAAGTAG 1140 0.4211 MVVVGFSNGVFALYQMPDFVCIHMMSISKEKITTAFFNDLGNWLSFGCPKLGQLLVWEWRSESYILKQQGHYFDVNYVAYSSDSQLLATGADDNKVKLACSTLDGQIHFWDPIDGVLMYTIEGSRDIAGGRLMTDCRTFANSSTRKCFTTLCYSADGSYILAGGSSRYVCMYDVSDQVLLRRFQITHNLSLDGVLDFLNSKNMTEARPLDLIDDYNSDIEEDEATSALDSESEKLVQEALYRFMIGRTTLVIAHRLSTICKADLVAVLQHGRVSEIETHDELFVKGENGVYAKLIRMQETENESSTSNARKSNARPSSARNFATVLKKMFMSGFSGDLEYAHAKATQLAGEAIANVAGLLQHMAHKINSSQKRILFSSK* 380
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1929 379 Gene3D - 1 98 IPR015943 GO:0005515
Psa4g1929 379 PANTHER WD40 REPEAT PROTEIN 1 98 IPR027145 -
Psa4g1929 379 PANTHER WD40 REPEAT PROTEIN 98 238 IPR027145 -
Psa4g1929 379 Gene3D - 222 311 IPR027417 -
Psa4g1929 379 Pfam WD domain, G-beta repeat 69 98 IPR001680 GO:0005515
Psa4g1929 379 Gene3D - 99 199 IPR015943 GO:0005515
Psa4g1929 379 SMART WD40_4 18 58 IPR001680 GO:0005515
Psa4g1929 379 SMART WD40_4 134 173 IPR001680 GO:0005515
Psa4g1929 379 SMART WD40_4 61 100 IPR001680 GO:0005515
Psa4g1929 379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 298 IPR027417 -
Psa4g1929 379 ProSiteProfiles Trp-Asp (WD) repeats profile. 68 98 IPR001680 GO:0005515
Psa4g1929 379 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 2 187 IPR011047 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Psa4g1929 Psa-Chr4 141066517 141068369 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1929 326 356 Calmodulin-binding Proteins AT2G36910 87.097 7.33e-10 58.9