Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1908 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCAGCGCTAAAAGCTGGAGTACTCAAACATGGGTCAGGAAAATGGCGCACTATACTTACTGATCCTGACTTTTGTGCCATTTTGCGTACTCGTTCAAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAAGCAAAGCTTGCTCTTAAAAAGAACCTTCCAGCCCCCAAAATTGACAATAATCAATTGGCCTTGAGTAAAGTAGTTCAACGTGAAGACATTCTCGACATTAAGCCTCTAACAATTTCTGGTGGAGCATTGCAATCTTCTAATTCAAAAGAACAAGTATCAAGGTTGGGGGATAATCATGTACTAGAGGCTATTGTCAATATGAAGGATCCAAAAGGTTCTGACAAGGCTGCCATTGCTTCTTACATAGAGGAAAAATATCAGTGTCCACCAGATCTTCAAATGTTACTGTCAAAAAAACTGCAGCATATGGTGACAAGTGGCAAAATAGTCCAGGAAAAGCACAAGTACAAAGTTATGCCAAGTCCAACAGTCTCTGAAAAAAGAAGCTCTTCCTTGATGCTCATGGAAGCGAGGCCCAAAGATTTTCTAGAAGTGGAGAAGAGTGGTGATGTCAACATCGTTTCAAAATCTCAAATTGACGCAGAGCTATCAAAAGCGAGGAGCATGACAGCTCAAGAAGCAGCAGCTGCAGCTGCAAAAGCAGTTGCAGAGGCCGAAGTTGCCATTGCACAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCAGAAGCTGAGGCTGCTCAAGTCTTTGCAAAAGCAGCGAAGAAGGCGCTTAAATGCAAAATGCTTCATATTTGA 885 0.4339 MGAPKQKWTAEEEAALKAGVLKHGSGKWRTILTDPDFCAILRTRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPAPKIDNNQLALSKVVQREDILDIKPLTISGGALQSSNSKEQVSRLGDNHVLEAIVNMKDPKGSDKAAIASYIEEKYQCPPDLQMLLSKKLQHMVTSGKIVQEKHKYKVMPSPTVSEKRSSSLMLMEARPKDFLEVEKSGDVNIVSKSQIDAELSKARSMTAQEAAAAAAKAVAEAEVAIAQAEAAAREAEAAEAEAEAAQVFAKAAKKALKCKMLHI* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1908 294 PANTHER SINGLE MYB HISTONE 4 1 294 IPR044597 GO:0003691
Psa4g1908 294 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa4g1908 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Psa4g1908 294 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Psa4g1908 294 CDD SANT_TRF 6 57 - -
Psa4g1908 294 Pfam linker histone H1 and H5 family 127 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa4g1908 294 Gene3D - 2 59 - -
Psa4g1908 294 Coils Coil 242 279 - -
Psa4g1908 294 SUPERFAMILY "Winged helix" DNA-binding domain 125 195 IPR036390 -
Psa4g1908 294 SMART sant 4 59 IPR001005 -
Psa4g1908 294 Gene3D - 124 197 IPR036388 -
Psa4g1908 294 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Psa4g1908 294 PANTHER MYB TRANSCRIPTION FACTOR 1 294 - -
Psa4g1908 294 SUPERFAMILY Homeodomain-like 2 66 IPR009057 -
Psa4g1908 294 SMART h15plus2 123 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1908 Psa-Chr4 138277761 138289287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1908 1 291 Single Myb Histone (SMH) Gene Family AT5G67580 52.027 7.24e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa4g1908 Linker_histone 4.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1908 K09422 - gmx:100779583 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3903 2 409767082 409772316 Psa4g1908 4 138277761 138289287 PCT