Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1883 ATGGGTCTTAATAACCAAGATGCTGGAAATAACAACTCAAACCTTCTTCTTCTAGGTTTAGCTCTTACTCTTACCAAACAAGACACACCACCAACCAACAACAACGTTGCAAAACCTTATTCCTCAAGTAACAACAACTATGAAGCTGAACCATCTTTAACGTTGGGTTTATCTAGTTACTACGAAGAACCTCTTGATTTTTCTACACAGACAAACTCACCTCTCCATAGCGTTGTTTCGTCTTTCTCTAGTGGTAGAGTGAAAAGAGAAAGAGATGTTAGCAGTGAAGAAATCGAAATAACTGAGACTGAAAGAGTTTCTTCCAGAATTAGCGACGAAGAAGAAGACGGTGTCACCACAGCTAGGAAGAAACTTAGACTCACCAAAGATCAATCCGCCATGCTCGAAGAAAGCTTCAAACAACACAGCACTCTCAACCCTAAACAGAAGCAAGCCTTAGCCCGAGAGTTAAATCTAACCGCTCGACAAGTTGAAGTCTGGTTCCAGAACCGCAGAGCCAGAACAAAGCTGAAGCAAACAGAGGTGGATTGTGAGTTCCTAAAGAAATGTTGTGAAACATTAACAGATGAAAACAGAAGGCTACAAAAAGAGGTTCAAGAACTAAAGGCACTGAAACAAGCACAACCTTTGTATATGCCTATGCCTGCTGCAACCCTTACTATGTGCCCTTCTTGTGAGAGGCTAGGTGGTGGTGTTAATGGTGGTTCTTCCAATAAGGGCAATTTTTCAATGGCTCCTAAACCTCACTTTTACAATCCCTTCACAAATTCTTCTGCAGCATGTTGA 807 0.4151 MGLNNQDAGNNNSNLLLLGLALTLTKQDTPPTNNNVAKPYSSSNNNYEAEPSLTLGLSSYYEEPLDFSTQTNSPLHSVVSSFSSGRVKRERDVSSEEIEITETERVSSRISDEEEDGVTTARKKLRLTKDQSAMLEESFKQHSTLNPKQKQALARELNLTARQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQELKALKQAQPLYMPMPAATLTMCPSCERLGGGVNGGSSNKGNFSMAPKPHFYNPFTNSSAAC* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1883 268 Pfam Homeobox associated leucine zipper 178 213 IPR003106 GO:0006355|GO:0043565
Psa4g1883 268 SUPERFAMILY Homeodomain-like 116 179 IPR009057 -
Psa4g1883 268 SMART halz 178 221 IPR003106 GO:0006355|GO:0043565
Psa4g1883 268 SMART HOX_1 120 182 IPR001356 GO:0003677
Psa4g1883 268 Coils Coil 184 214 - -
Psa4g1883 268 CDD homeodomain 122 179 IPR001356 GO:0003677
Psa4g1883 268 Gene3D - 117 183 - -
Psa4g1883 268 PANTHER - 16 268 - -
Psa4g1883 268 Pfam Homeodomain 122 176 IPR001356 GO:0003677
Psa4g1883 268 ProSiteProfiles 'Homeobox' domain profile. 118 178 IPR001356 GO:0003677
Psa4g1883 268 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 16 268 - -
Psa4g1883 268 ProSitePatterns 'Homeobox' domain signature. 153 176 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1883 Psa-Chr4 136938100 136939787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1883 1 268 Homeobox Transcription Factor Family AT4G37790 59.932 1.80e-89 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa4g1883 Homeodomain 3.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1883 K09338 - gmx:100795135 330.487