Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1878 ATGAAGAGAATGGAAAATAATGATGATGCTGTTGTTGACATTAACAATGAAAATAACTGGTTGGGTTTTTCTTTGTCACCTCAAATGAATGTTGGTGTTCCTTCACAATCTTCTTCTGTTTCTGAAGCTGTTCCATTTCCTTCAAGCTTTTACCAAACTGCCCCTCTTAGTAACTATTGTTTCTCTTATGGACTTGAACATGAAAATGTTGGGTTGTATTCATTGCTTCCCATTATGCCCCTCAAATCTGATGGATCTCTCTATGAAATGGAGTCACAAACACAAGCAATGGTAACTACTTCAGCACCAAAACTAGAGAACTTCTTAGGTAGTGAAGCTATGGGGACCCCTCATTATGCATGTAGTGGTACCACTGTCACAGAAACAATGCCTTTGAGCTTAGACAGCATGTTCCAAAACCAAGTTCAAAACATGAACAACCAACAACAACAATTTTCATCATATTACTCAACTTTGAGAAACCATGATTTGATGTTAGAAGGGTCAAAGCAAAGTCAAGCTTCAAGTGGAAATTTTCATGTTTCAAACATGGGTGAGGATCATGGACTTAATGGTTTAAAGAGCTGGGTTTTAAGGAATTTTCCGGCTAGTCATGGACTTGATCAGTCAAAGATGAGTTTTCCTGTTGGTGTGGATGAAAATGAAGGTGAATCTGGTTCAAATATCGGTTCGATGGCTTATGGTGATTTGCATTCTTTGAGCCTGTCGATGAGTCCTAGCTCGCAATCTAGCTGCGTTACAACTTCGCATGTTGTTGTTGAAAATTCTGTTGCAGTGGATACAAAGAAAAGAGGAAGTGAAAAGTTTGAGCAGAAGCAAATTGTTCATAGGAAATCTATTGATACTTTTGGTCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGATGGACCGGGAGATATGAAGCTCATCTATGGGACAATAGTTGCAAAAAAGAAGGCCAAAGCCGAAAAGGAAGACAAGTTTATCTTGGTGGTTATGATATGGAAGAAAAAGCTGCTAGAGCTTATGATCAAGCAGCACTCAAGTATTGGGGACCATCCACTCACATAAATTTCCCTTTGGAAGATTATCAAAATCAACTTGAGGAAATGAAGAACATGACAAGACAGGAATATGTTGCTCATTTAAGAAGAAAAAGCAGCGGCTTCTCAAGAGGTGCTTCCATGTACAGAGGAGTAACAAGACACCATCAACATGGAAGATGGCAGGCTAGAATTGGTAGGGTGGCTGGTAACAAAGACCTATATCTTGGAACCTTCAGTACTCAAGAGGAAGCGGCTGAGGCCTACGACATAGCTGCGATAAAATTCAGAGGAGCTAATGCAGTAACCAACTTTGATATAATAAAATATGATGTTGAAAAAATCATGGCAAGTAGTAACCTTCTAAGCATTGAACTAGCAAGAAGGAACAAAGAGGTAGTAAATATTACCACAACTCAATATATTGAACCTCTCAACAACACTACTCAAGAGGCCATGCAGAAGAATATGATTCTCTATCAATCCCCTCAACAACAACAACAACTTCAACAGAATCAACCAAGAATCGAGAACGAGAGAACTCATCAATCATTTTCCTCGGTGTCTTTGGATAACATGTTTCATCAAGAAGTAGCCGAGGAAGCAAGTAAGATGAGAGCGCATTTGTCAAATGCTTCTTCATTGGCCACAAGTTTGAGTAGCTCAAGAGAAGGTAGCCCTGATAGAACAAGCTTGCAGAATCTCTCTGGAATTCCTTCAACATCATCGAAACTATTGGTTGCGACCGCTTCGAATAGTAATATGAATTCTTGGGACCCTTCTCAACATCATCTTAGGCCTGCTCTTTCTTTGCCTCAGATGCCAGTTTTTGCTGCTTGGACTGATGCATAG 1902 0.3959 MKRMENNDDAVVDINNENNWLGFSLSPQMNVGVPSQSSSVSEAVPFPSSFYQTAPLSNYCFSYGLEHENVGLYSLLPIMPLKSDGSLYEMESQTQAMVTTSAPKLENFLGSEAMGTPHYACSGTTVTETMPLSLDSMFQNQVQNMNNQQQQFSSYYSTLRNHDLMLEGSKQSQASSGNFHVSNMGEDHGLNGLKSWVLRNFPASHGLDQSKMSFPVGVDENEGESGSNIGSMAYGDLHSLSLSMSPSSQSSCVTTSHVVVENSVAVDTKKRGSEKFEQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDQAALKYWGPSTHINFPLEDYQNQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGANAVTNFDIIKYDVEKIMASSNLLSIELARRNKEVVNITTTQYIEPLNNTTQEAMQKNMILYQSPQQQQQLQQNQPRIENERTHQSFSSVSLDNMFHQEVAEEASKMRAHLSNASSLATSLSSSREGSPDRTSLQNLSGIPSTSSKLLVATASNSNMNSWDPSQHHLRPALSLPQMPVFAAWTDA* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1878 633 MobiDBLite consensus disorder prediction 512 534 - -
Psa4g1878 633 MobiDBLite consensus disorder prediction 565 587 - -
Psa4g1878 633 CDD AP2 295 362 IPR001471 GO:0003700|GO:0006355
Psa4g1878 633 SUPERFAMILY DNA-binding domain 295 363 IPR016177 GO:0003677
Psa4g1878 633 SUPERFAMILY DNA-binding domain 397 456 IPR016177 GO:0003677
Psa4g1878 633 ProSiteProfiles AP2/ERF domain profile. 398 456 IPR001471 GO:0003700|GO:0006355
Psa4g1878 633 Gene3D AP2/ERF domain 398 458 IPR036955 GO:0003700|GO:0006355
Psa4g1878 633 Gene3D AP2/ERF domain 295 364 IPR036955 GO:0003700|GO:0006355
Psa4g1878 633 PRINTS Ethylene responsive element binding protein signature 297 308 IPR001471 GO:0003700|GO:0006355
Psa4g1878 633 PRINTS Ethylene responsive element binding protein signature 438 458 IPR001471 GO:0003700|GO:0006355
Psa4g1878 633 SMART rav1_2 398 462 IPR001471 GO:0003700|GO:0006355
Psa4g1878 633 SMART rav1_2 296 368 IPR001471 GO:0003700|GO:0006355
Psa4g1878 633 CDD AP2 397 457 IPR001471 GO:0003700|GO:0006355
Psa4g1878 633 ProSiteProfiles AP2/ERF domain profile. 296 362 IPR001471 GO:0003700|GO:0006355
Psa4g1878 633 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 16 631 - -
Psa4g1878 633 Pfam AP2 domain 399 448 IPR001471 GO:0003700|GO:0006355
Psa4g1878 633 Pfam AP2 domain 296 354 IPR001471 GO:0003700|GO:0006355
Psa4g1878 633 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1878 Psa-Chr4 136508749 136512662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1878 1 519 AP2-EREBP Transcription Factor Family AT4G37750 49.653 1.23e-158 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Psa4g1878 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1878 K09285 - gmx:100787611 812.757