Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1872 ATGAGATTCCTCACATACATAATCATTCCTCTTTTCTTTCTTTCTCAATCCTCAAACGCCTCCAACCTTATCGTTCGATCTTGTAGAGAAGCCTCCAAGAATGACCCGAATTTGGGCTATGATTTCTGCGTTACGTCCCTTTATGAAGCTGCTTGCAAGAACAAGTTGCACCCCAAAAAACTAGAAGACCTTGTGAACATGTCAATGCAACTAACCAAATCCAATGGAACAAACATCATTTCCATAATTTCACATGACTTGCAAAACCAAACTCATGGTGAATATGTGAAGGCTTGTTTACGCGATTGTCTCGATCTTTATAATGATTCTCTTTCGTCTTTAGATAATGCTATGGTTGCTTTCAATACGTCGAAGGATTTGGACACAGCCAATATCAACGTGAGCGCCGCCTTGGATGATTCAGTTACATGTGAAGATCAGTTCAAAGAAAGGAAAGAGGAGAATGAAACTTCTCCTTTAACAGAAGAGAATCATGTTTACTTTCAACTCAATGTAATATCTCTATCTTTCATCCAAATGATTCGTCAACGCTACTAG 558 0.3871 MRFLTYIIIPLFFLSQSSNASNLIVRSCREASKNDPNLGYDFCVTSLYEAACKNKLHPKKLEDLVNMSMQLTKSNGTNIISIISHDLQNQTHGEYVKACLRDCLDLYNDSLSSLDNAMVAFNTSKDLDTANINVSAALDDSVTCEDQFKERKEENETSPLTEENHVYFQLNVISLSFIQMIRQRY* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1872 185 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN 11 181 - -
Psa4g1872 185 Pfam Plant invertase/pectin methylesterase inhibitor 23 175 IPR006501 GO:0004857
Psa4g1872 185 Gene3D Invertase/pectin methylesterase inhibitor family protein 19 181 IPR035513 -
Psa4g1872 185 PANTHER PECTINESTERASE INHIBITOR-LIKE 11 181 - -
Psa4g1872 185 SMART PMEI_2 19 177 IPR006501 GO:0004857
Psa4g1872 185 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 22 181 IPR035513 -
Psa4g1872 185 CDD PMEI-Pla_a_1_like 28 180 IPR034088 -
Psa4g1872 185 TIGRFAM PME_inhib: pectinesterase inhibitor domain 4 181 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1872 Psa-Chr4 135308191 135309486 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1872 43 162 Carbohydrate Esterase AT1G53840 27.481 9.11e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1872 - - gmx:100817110 219.164