Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1867 ATGATTCAAATTTCGTCTTCCAATTACATGCCTGAATTTGAAATGGAAGACACTAGTTTGTTTCAAGAAATGGATTCATTTGCATTCAACTTTGATGATATTTCATACTTGAACACTTTCTCATCAGCATCCACACCTGAGAGTACTAATTCCTCTCATAATAATAATAATAAGAGATTTCATTCAGAAACCACACAAAACTACTCTTTCCCCATTGAAAGTCCTGATCAATCTGTTGCCTCTGCAACACCACCAACAAAGGCTTCTTCTTCTTCAAAAATCATTTCTTTTGACAATATGAATTCAAGGATTAAGAAGCCAAAAACGGAGTCTGGGTACGGTGAAAACTTGAATTTTGGAAGTGAGTATGATAACCGAGAGAACAAGGTGGCGGCAGCGATAACAAACAGAAATCCGATCCAAGCACGAGATCATGTAATAGCTGAAAGAAAACGAAGGCAAAAGCTTAACCAGAAATTCATTACTCTTTCCTCCATTCTTCCTGGACTCAAAAAGATGGACAAGGCAACTATTTTGGAAGATGCTATAATTCATCTTAACCAATTAAAAGAACAAGTCAAGAATTTAGAGGAACAAGTAGCCGATAAAAAAGTCGAATCCGCAGTTTTTATGAAAAGATCTATTCTCTTTGCTGATGATGATAGCTCCTCCTCTTACGATGAAAACTCAGACCAATCACTCCCAAAAATCGAAGCAAGAGTTTCAGGAAAAGACATGCTCATCAGAATCCACTGCAACAAACTCCGCGGCCGAACTGCGACGGCAATACTCAACAAACTCGAAAAACATCATCTCAGCATTCAGAGTAGTTCCGTTTTACCATTTGGAAATAACTATATTGACATAACCATTGTTGCTGAGGTGAATAAAGAATATTGCTTGACGATAAAAGAACTGATAAGAAGCATAAATCAGGTTTTGAAGCAGCTCATTTGA 957 0.371 MIQISSSNYMPEFEMEDTSLFQEMDSFAFNFDDISYLNTFSSASTPESTNSSHNNNNKRFHSETTQNYSFPIESPDQSVASATPPTKASSSSKIISFDNMNSRIKKPKTESGYGENLNFGSEYDNRENKVAAAITNRNPIQARDHVIAERKRRQKLNQKFITLSSILPGLKKMDKATILEDAIIHLNQLKEQVKNLEEQVADKKVESAVFMKRSILFADDDSSSSYDENSDQSLPKIEARVSGKDMLIRIHCNKLRGRTATAILNKLEKHHLSIQSSSVLPFGNNYIDITIVAEVNKEYCLTIKELIRSINQVLKQLI* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1867 318 Coils Coil 179 206 - -
Psa4g1867 318 PANTHER TRANSCRIPTION FACTOR NAI1 6 317 - -
Psa4g1867 318 Pfam Helix-loop-helix DNA-binding domain 144 189 IPR011598 GO:0046983
Psa4g1867 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Psa4g1867 318 MobiDBLite consensus disorder prediction 75 94 - -
Psa4g1867 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 210 IPR036638 GO:0046983
Psa4g1867 318 PANTHER BHLH TRANSCRIPTION FACTOR 6 317 - -
Psa4g1867 318 Gene3D - 136 202 IPR036638 GO:0046983
Psa4g1867 318 SMART finulus 146 195 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1867 Psa-Chr4 134579308 134581205 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1867 2 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.088 3.52e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g1867 HLH 2.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1867 - - mtr:MTR_4g097920 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1867 4 134579308 134581205 Psa4g1867 4 134579308 134581205 ECH
Psa2g3933 2 412007768 412009748 Psa4g1867 4 134579308 134581205 PCT