Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1866 ATGACTTCAATGGAGGAATCATGGACTAATTGGCTATGTGAAATGGATCCAGATGATTACGGTTTCATCAACCAATCAAGCATAAATGCAGACACTGTTAGTAGTTTTGAGAGTAACTTAAAGAAGCCTTCAAAGTTACTCAAAACAGATTCTTCATCAACTTGTTCATACAATATTTCGTTTGAAAATGAAAATCCACCACCAATAAGAGTTGAACCAGCTTTGAAGCCAAAATCCAAAACTATGAACTCAAAGAATGAACGAAAACGTGTTAATATTCAAGAGAGCAACAAGAAGAACAGTTCATTTTCCAAATCTTCAACTCATCACATACCAGATCATATTATTGCTGAGAGAAAAAGAAGACAAAAGATTAGCCAACAGTTCATAGCTCTTTCAGCTCTTATTCCAAATCTAAAAAAGATAGACAAGGCTTCTGTGTTATGTGATGCTATTAAGTATGTGAAGGATCTTAAGGAGCAAGTGAAACTGTTGGAGGAACAAAACAAAAAGAAAAGTGTTGAATCAATGGTGGATGAAGATATTCCACACACTTCCTCGTATAATGAAAAATCAAAAACAAATATGTTACTGCCAGAAGTTAAAACTAGGTTGTCGGGTAAGAATGTGGTGATTCGAATCCTCTATGAGAAAGATAAGACAGTGATGGTGAATGTGTATAGAGAGATAGAGAAACTTCATCTCTCAGTTATCAATGCAAGTTCATTTTCCTTTGGTTCCTCTCTTCTGGCCATAACCATCATTGCCAAGATGGAGTATGAATTGAAGATGAGCATGCAGAAACTGGCAAAAAAACTAAGACTTGGACTGGTGCAATTAAAGTAG 846 0.3546 MTSMEESWTNWLCEMDPDDYGFINQSSINADTVSSFESNLKKPSKLLKTDSSSTCSYNISFENENPPPIRVEPALKPKSKTMNSKNERKRVNIQESNKKNSSFSKSSTHHIPDHIIAERKRRQKISQQFIALSALIPNLKKIDKASVLCDAIKYVKDLKEQVKLLEEQNKKKSVESMVDEDIPHTSSYNEKSKTNMLLPEVKTRLSGKNVVIRILYEKDKTVMVNVYREIEKLHLSVINASSFSFGSSLLAITIIAKMEYELKMSMQKLAKKLRLGLVQLK* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1866 281 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 158 IPR011598 GO:0046983
Psa4g1866 281 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 174 IPR036638 GO:0046983
Psa4g1866 281 SMART finulus 115 164 IPR011598 GO:0046983
Psa4g1866 281 MobiDBLite consensus disorder prediction 68 112 - -
Psa4g1866 281 Pfam Helix-loop-helix DNA-binding domain 114 158 IPR011598 GO:0046983
Psa4g1866 281 MobiDBLite consensus disorder prediction 81 95 - -
Psa4g1866 281 PANTHER BHLH TRANSCRIPTION FACTOR 4 35 - -
Psa4g1866 281 PANTHER BHLH TRANSCRIPTION FACTOR 45 280 - -
Psa4g1866 281 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 45 280 - -
Psa4g1866 281 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 4 35 - -
Psa4g1866 281 Coils Coil 155 175 - -
Psa4g1866 281 Gene3D - 112 181 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1866 Psa-Chr4 134413968 134418917 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1866 94 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.560 4.39e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g1866 HLH 4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1866 - - cam:101494527 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3934 2 412150540 412151934 Psa4g1866 4 134413968 134418917 PCT