Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1865 ATGAAGGAATCATCAACCAGCAAATGGCTATCTGATTTGGAAATGGATGAGTACAATTTATTTCCTGAGGAATGCAACCTGAATTTCCTTGATGCTGATGAGAAACAAGAGTTTGTTTCACATGACATAGGTACTGTCTTTCAAGAACAAAGCCAACAACAATGTTTTTATTCAGAGTCCACTCTCAACAACTCATTCACCGATGAAACAAGTTTTGAGTCTTTTGACTTTGATTTTGAGAAACCGACGTTTTCAACAAACCTATCTTCATCTTCATCTAACTCATCTTTTCAGTCTCTGATTCTCTCTTTTGACAACCAAAACTCACCTGCTACCAACACCCCCCAATTTTACGAATTTGACCCTACTAGTACCACCTTAAACTCCAAACAGAACGAAAACACTCATGTCTCAACTCAAACTCCAAAAGCGTGGTCAAAAAATCAAAACTTGGAAACAAAAACCTCACAACCAAAGAGATCTCGAGCTAACGCTGAGGATCATATCATGGCTGAGAGAAAACGAAGAGAGACACTCAGCCAGAGTTTCATTGCTCTTGCAGCTCTTGTTCCTAACCTTAAAAAGATAGACAAAGCTTCTGTATTATCTGAGTCTATCAAATACGTGAAAGAGCTTAAAGAGCGTTTGGAAGTTTTGGAAGATCAGAACAAGAAAACAAAACTAGAATCGGTTGTTGTTCCGAACAAACCAGACATATGTAGCGATGAAGATAACTCTTCATGCGATGAGAACATTGAAGGTGGTGCTGGTGCTGGTGATAATGAATCACTCTTCCAAGTGGAAGCAAGAGAGTTAGGAAAAGAGATTCTGATTAGGATCCAGAGCAAGAAGAAGAAGGGTGTTTTGGTAAAAATGATGGAAGAGATTCAAAGTTTAGAATTATTTGTTGTGAATAGCAGTGTGTTACCTCTTGGGGATTCTGTCATTGACATTACGATCATTGCTCAGATGGGTGAAGGATACAGATTAAGCGTAAAGGAACTTGCGAAGAAGTTGCGCATGAAAGCATTGAAGTTTATGTCATCATAA 1050 0.3857 MKESSTSKWLSDLEMDEYNLFPEECNLNFLDADEKQEFVSHDIGTVFQEQSQQQCFYSESTLNNSFTDETSFESFDFDFEKPTFSTNLSSSSSNSSFQSLILSFDNQNSPATNTPQFYEFDPTSTTLNSKQNENTHVSTQTPKAWSKNQNLETKTSQPKRSRANAEDHIMAERKRRETLSQSFIALAALVPNLKKIDKASVLSESIKYVKELKERLEVLEDQNKKTKLESVVVPNKPDICSDEDNSSCDENIEGGAGAGDNESLFQVEARELGKEILIRIQSKKKKGVLVKMMEEIQSLELFVVNSSVLPLGDSVIDITIIAQMGEGYRLSVKELAKKLRMKALKFMSS* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1865 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Psa4g1865 349 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 4 348 - -
Psa4g1865 349 SMART finulus 169 218 IPR011598 GO:0046983
Psa4g1865 349 MobiDBLite consensus disorder prediction 127 166 - -
Psa4g1865 349 Pfam Helix-loop-helix DNA-binding domain 167 212 IPR011598 GO:0046983
Psa4g1865 349 Gene3D - 150 229 IPR036638 GO:0046983
Psa4g1865 349 MobiDBLite consensus disorder prediction 127 158 - -
Psa4g1865 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 230 IPR036638 GO:0046983
Psa4g1865 349 Coils Coil 202 229 - -
Psa4g1865 349 PANTHER BHLH TRANSCRIPTION FACTOR 4 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1865 Psa-Chr4 134301315 134303452 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1865 99 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.329 3.32e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g1865 HLH 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1865 - - gmx:100788128 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1865 4 134301315 134303452 Psa4g1865 4 134301315 134303452 ECH