Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1864 ATGGAGGAAATGAAGACACCACTAAACATATCAGCAGACAGCAGTTGGTTATCTGATTTGGAAATGGTGGATGAATACATATTATCTGATAAAGACTGCAACTTGAACTTGAGCATGCTTGATGCGGACGAGGAACAAGATTTTCTATCACATGATGTAGCTAGTGTCTTTGCCTTTGAGGAGCATAGAGAGAGCCTGCGACAATGTTTAAACACAGAGTGCATTTCCACAACTATGAGCGAAACATTTACAGATGAAACGAGTTTTGAGTCTTTTGATAACTTTGATTTTGATTTCGAGAAACCAACTAAGCAGATGAAAACAATCGATCACAGTGCTACTTCACTATCCTCTTATCAGTTGCCGCAGATCTTGTCTTTTGACAATCCAAACCCAACAGAGTTTTATGGGTATGGATATGATCTAAAACAGAAAGAAACAGTGACTTCGGCGTCACGGGGAAACACAAATTTTTCGACTCAAAACTCAAAAGGGTCTTCAAAAACATCGCGAGCTAAGAGGTCTCCAGCTGACATAAATGATCACATTATGGCGGAGAGAAAGAGAAGAGAGAAGCTCAGCCAAAGCTTCATTGCTCTTGCTGCTCTCATTCCGGACTTAAAGAAGATGGACAAGGCTTCGATATTAGCGGAGACAATCAAATACGTGAAAGAGCTTAAGGAGCGTTTGGAGATTTTAGAAAAGAAGGCCAAGAATCCACAGACAGATCAGTCGACGGTCACTCCGAGTCCAATCAAACCAGAGGTCTATAACGACAAGCATTGCTCATCATCTGATGAGAGTACTGACACTGAAAGTGCTATAGATGGTACTGCCACTGAGTCTCTCTTCAAGATGGAAGCAAGAGTTCTAGAGCAACACATATTGATTCGGATCCATTGCCAAAAGCATAAAGGGCTTCTTGTTAACATCATCGCTGTGATTCAAAGTTTTGAATTATTTGTTGTCAATAACAGTGTTCTAGCTTTTGGAGATTCTATCCTCGACATTACCATCATTGCTGAGATTGGTGAAGGCTACAACTTGACTATAAAAGAACTCGTCGACAATCTACGTATAGCGGCATTGAAGTTTATGTCAGCGTAA 1107 0.4065 MEEMKTPLNISADSSWLSDLEMVDEYILSDKDCNLNLSMLDADEEQDFLSHDVASVFAFEEHRESLRQCLNTECISTTMSETFTDETSFESFDNFDFDFEKPTKQMKTIDHSATSLSSYQLPQILSFDNPNPTEFYGYGYDLKQKETVTSASRGNTNFSTQNSKGSSKTSRAKRSPADINDHIMAERKRREKLSQSFIALAALIPDLKKMDKASILAETIKYVKELKERLEILEKKAKNPQTDQSTVTPSPIKPEVYNDKHCSSSDESTDTESAIDGTATESLFKMEARVLEQHILIRIHCQKHKGLLVNIIAVIQSFELFVVNNSVLAFGDSILDITIIAEIGEGYNLTIKELVDNLRIAALKFMSA* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1864 368 MobiDBLite consensus disorder prediction 237 274 - -
Psa4g1864 368 Pfam Helix-loop-helix DNA-binding domain 182 226 IPR011598 GO:0046983
Psa4g1864 368 PANTHER BHLH TRANSCRIPTION FACTOR 6 367 - -
Psa4g1864 368 MobiDBLite consensus disorder prediction 151 180 - -
Psa4g1864 368 SMART finulus 183 232 IPR011598 GO:0046983
Psa4g1864 368 Gene3D - 166 242 IPR036638 GO:0046983
Psa4g1864 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 226 IPR011598 GO:0046983
Psa4g1864 368 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 6 367 - -
Psa4g1864 368 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 245 IPR036638 GO:0046983
Psa4g1864 368 MobiDBLite consensus disorder prediction 151 173 - -
Psa4g1864 368 Coils Coil 216 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1864 Psa-Chr4 133782598 133784820 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1864 94 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 34.364 3.07e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g1864 HLH 4.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1864 - - mtr:MTR_4g098035 342.043