Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1862 ATGGAGGAAATCAACAACAAATGGCTTTCGGATTTGGAAATGGATGAGTACAGTTTATTTCCGGAAGAATGCAACCTGAATTTCCTTGACGATGATGATAAACAAGAGTTTCTTTCACATGACATAGATACTGTCTTTCAAGAACAAAACCAACAACAATGTTTGAACTCAGAGACCACTTTCAACAACTCATTCACAGATGAAACAAATTTTGAGTCATTTGACTTTGCTTTTGAGAGACCAACCATTGATCACAATGAAAACTTCACAGCAGAAACCATATCACTAAAACTATCTCCATCATCTTCTATCTCTTCTTTTCAGTCTCAGATTCTCTCTTTTGAAAACCTCCCAAATTCACCTGCTACCAACACCCCCCATTTTTATGAATTTGACCCTACTACCTTGAACTCAAACCAGAACGAAATAGGGTCAGTGTCACTATCACTGCACCAAACGGAAAACACTCATGTCTTCACTCAAACGCCAAAAGGGTCACCAAAAAATCAAAACTTTGAAACAAAAACCTCACAACCAAAGAGATCTCGAGCTAACGCTGAGGATCATATCATGGCTGAGAGAAAACGAAGAGAGATACTCAGCCAGAGTTTCATTGCTCTTGCAGCTCTTGTTCCTAACCTTAAAAAGATAGACAAAGCTTCTGTATTAGCTGAGTCTATCAAATACGTGAAAGAGCTTAAAGAGCGTTTGGAAGTTTTGGAAGATCAGAACGAGAAAACAAAAGCAGACTCGGTGGTTGTTCTGAATAAACCAGACATATGTAGCGATGAAGATTCCTCATCATGTGATGAGAACATTGAAGGTGCTGATGGTGGTGAGAATGAATCACTCATACAAGTGGAAGCAAGGGCGTTAGAGAAAGAGATGCTGATTCGGATTCATTGCGAAAAGAAGAAGGGAGTTTTGGTAAAAATGATGGGAGAGATTCAAAGTTTAGAATTACTTGTTATGAATACGAGTGTGTTACCGTTTGGCGATTCTGTCCTCGACATTACCATTATTGCTCAGATTGGTGAAGGGTACAATTTGAACATAAAGGAGCTTGTGAAGAAGCTGCGCATGGCAGCAATGAGGTTTATGTCATCATAA 1110 0.391 MEEINNKWLSDLEMDEYSLFPEECNLNFLDDDDKQEFLSHDIDTVFQEQNQQQCLNSETTFNNSFTDETNFESFDFAFERPTIDHNENFTAETISLKLSPSSSISSFQSQILSFENLPNSPATNTPHFYEFDPTTLNSNQNEIGSVSLSLHQTENTHVFTQTPKGSPKNQNFETKTSQPKRSRANAEDHIMAERKRREILSQSFIALAALVPNLKKIDKASVLAESIKYVKELKERLEVLEDQNEKTKADSVVVLNKPDICSDEDSSSCDENIEGADGGENESLIQVEARALEKEMLIRIHCEKKKGVLVKMMGEIQSLELLVMNTSVLPFGDSVLDITIIAQIGEGYNLNIKELVKKLRMAAMRFMSS* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1862 369 Pfam Helix-loop-helix DNA-binding domain 188 233 IPR011598 GO:0046983
Psa4g1862 369 MobiDBLite consensus disorder prediction 160 187 - -
Psa4g1862 369 Coils Coil 223 250 - -
Psa4g1862 369 PANTHER BHLH TRANSCRIPTION FACTOR 4 368 - -
Psa4g1862 369 Gene3D - 173 250 IPR036638 GO:0046983
Psa4g1862 369 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 4 368 - -
Psa4g1862 369 SMART finulus 190 239 IPR011598 GO:0046983
Psa4g1862 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 189 249 IPR036638 GO:0046983
Psa4g1862 369 MobiDBLite consensus disorder prediction 160 179 - -
Psa4g1862 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 184 233 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1862 Psa-Chr4 133484302 133486650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1862 109 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.924 1.14e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g1862 HLH 2.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1862 - - gmx:100788128 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1862 4 133484302 133486650 Psa4g1862 4 133484302 133486650 ECH