Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1858 ATGGAACCCAAACTTCCCAATGAAGGTTCTTCGTCTAACCCTGCAATGGAACCGAAACATCCCAATGAAGAAACTTTTCAAAGGTTTGTATATGCTTACCTGATGGAGAAAGGATATGAAAAGACTGCTGAGATTTTCCGAAATGATACTCAAATTTCTATACCAATGCCTGATCTTAATGAACCACCTGGATTCTTGTCCGACTTCTGGAATATATTCTACGATACGTATAACTCTAGAGCTAGGCAAAGAAACGAACAAACTTCTCCTCAGAATCAGCAGCCCACCCCCAGTAATGCTGGTTCCACGCAGAATCAGGTTATAGTGCAGCAGCCAAGCAACACTTCCACACAGAATCAGGTTATAGTGCAGCCCCCAAACATTGGTCCTGTAATCAACACTACTACTGCATCAATGATTTCTATTAAACACCATTTAACTTTTCCAAGCGGTGGTGTGAAGCTTTTGTCCTGCGATATTTCATCAGATGGAAGGATTGTAGCAAGTGGAGGGCAGGGCCCGCATGGGAGGAAGCCTTTCATTTGCTACACGGAAAATCGTATTGCTGTTACTGCAAAAGACACACATACAGGTACAATCACACATGTTAGATTTCATCCAGATTGTAAGCGGTTTGCAACCGCTTCGGCTGATAGAACAGTAAAACTATGGAATGCAAAAACTCATCAGACAGTGTTGCACCATATGAACCATAGTGTACTTAGACATAAAGGGGCTGTAAGATCGTTGGACTTCCACCCATTCGATTATAAAACTCTTTGCTCATCCGACGATACTGAAATTAAAGTATGGGATGTCAATACGTGCGTGACGTCGTACAGCTCTAAGGACGGTGGAGGAATAGTTAGAGTTCAGCCTTTATATGGGAGACTTTTGGCAGTTGCTAATGGAAATGCTATCACCATACTTGATTCTCGTAATTTGGTTTTGGTGAGGAAACTTGAGGGACAAGTTAAAGACATTAAGTCCATATGTTGGGATGTCACTGGCCAAATGATTGCCTCTGTGAGTGAAGATGAAGCACGTGTCTGGTCGGCGGGCGATGGACAATGCATAGGTAGCTATCCATCTAAAGAGAGGAAGTTTCAGTCTGTCATATTTCATCCTCGATACCATAAGGCCTTAGTTATTGGTGGCCATAAGTGTTTGTTATCGTTGAACCTTGAGAGTATGAGCGAATGTACTACGCGTGACACTCAGTTCTCAATTACTGCACTGGCAGCTGCCAAGGCGCAAAGTCAATTCATTGCATCAGGTAGCGATGATGGTGTGGTGAAGATTTGGAAATGA 1311 0.4294 MEPKLPNEGSSSNPAMEPKHPNEETFQRFVYAYLMEKGYEKTAEIFRNDTQISIPMPDLNEPPGFLSDFWNIFYDTYNSRARQRNEQTSPQNQQPTPSNAGSTQNQVIVQQPSNTSTQNQVIVQPPNIGPVINTTTASMISIKHHLTFPSGGVKLLSCDISSDGRIVASGGQGPHGRKPFICYTENRIAVTAKDTHTGTITHVRFHPDCKRFATASADRTVKLWNAKTHQTVLHHMNHSVLRHKGAVRSLDFHPFDYKTLCSSDDTEIKVWDVNTCVTSYSSKDGGGIVRVQPLYGRLLAVANGNAITILDSRNLVLVRKLEGQVKDIKSICWDVTGQMIASVSEDEARVWSAGDGQCIGSYPSKERKFQSVIFHPRYHKALVIGGHKCLLSLNLESMSECTTRDTQFSITALAAAKAQSQFIASGSDDGVVKIWK* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1858 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 193 228 - -
Psa4g1858 436 Gene3D - 99 289 IPR015943 GO:0005515
Psa4g1858 436 Pfam WD domain, G-beta repeat 409 436 IPR001680 GO:0005515
Psa4g1858 436 Pfam WD domain, G-beta repeat 242 272 IPR001680 GO:0005515
Psa4g1858 436 Pfam WD domain, G-beta repeat 195 225 IPR001680 GO:0005515
Psa4g1858 436 Gene3D - 290 436 IPR015943 GO:0005515
Psa4g1858 436 MobiDBLite consensus disorder prediction 82 105 - -
Psa4g1858 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 240 275 IPR001680 GO:0005515
Psa4g1858 436 Pfam LisH 28 50 IPR006594 GO:0005515
Psa4g1858 436 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 27 436 IPR044716 GO:0003714
Psa4g1858 436 MobiDBLite consensus disorder prediction 1 18 - -
Psa4g1858 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 403 436 - -
Psa4g1858 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 193 234 IPR001680 GO:0005515
Psa4g1858 436 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG-LIKE ISOFORM X1 27 436 - -
Psa4g1858 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 240 275 - -
Psa4g1858 436 MobiDBLite consensus disorder prediction 1 22 - -
Psa4g1858 436 PRINTS G protein beta WD-40 repeat signature 212 226 IPR020472 -
Psa4g1858 436 PRINTS G protein beta WD-40 repeat signature 259 273 IPR020472 -
Psa4g1858 436 PRINTS G protein beta WD-40 repeat signature 423 436 IPR020472 -
Psa4g1858 436 ProSiteProfiles LIS1 homology (LisH) motif profile. 22 54 IPR006594 GO:0005515
Psa4g1858 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 420 436 IPR001680 GO:0005515
Psa4g1858 436 SUPERFAMILY WD40 repeat-like 141 436 IPR036322 GO:0005515
Psa4g1858 436 SMART WD40_4 184 225 IPR001680 GO:0005515
Psa4g1858 436 SMART WD40_4 314 352 IPR001680 GO:0005515
Psa4g1858 436 SMART WD40_4 234 272 IPR001680 GO:0005515
Psa4g1858 436 SMART WD40_4 396 436 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1858 Psa-Chr4 132761994 132764428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1858 196 376 Miscellaneous Gene Families AT5G08390 22.703 3.33e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Psa4g1858 WD40 0.0046 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1858 - - mtr:MTR_4g088660 300.056