Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1857 ATGGGTTGCACGGTGAGAGAAAAACACATCAGAGCTAATCGGAGACCTCGATCGGTGAAACCCGATTCCGATTCTTCCGATAACAAAGACGCAATATCCAAATCCATAGCCGAGTCTGGTCTCAAACCCTTCAAGTACGATATTTCTCGCGTCGATTCCTCTTCTTCCCACACTCTTATTCCTCTTCCCTATCCAAACCCTAATTCCGATGAAACCGGTTGGGGTTATTGCACAGAGGAGCAATTAGAAGAGATCCTTTTGAAGAATTTGGAGTTCGTTTACAATGAAGCTGTTTCCAAGATTGTTGCTCTGGGTTACGACGAGGATGCTGCTTTGAAGGTTATTTTGCGAAATGGTCATTGTTATGGTGGCATGGATGTTTTGACTAACATTTTGCATAATTCTTTGTCGTATTTGAATACCAATGGTAGTGTTGCTGCTGGTGTTGGTTTTGGTGATGGGGTTAGTAGTAATAGGAATTCCGAGGAGTCTGAGCCTGTTTTCTCTGATTTGAGGCATTTAGAGGAATACTCTTTGGCTGGTATGGTGTGCTTGTTGCAACAGGTTAGGCCTAATTTGAGTAAAGGTGATGCTATGTGGTGTTTGCTTATGAGTGATCTTCATGTAGGGAAAGCTAGCACTATGGAGATTCCTGTGCCAGGTGGTGCGGTTCCTAGTCGGCCGCCTGCTATTGTTGAGTCTGGTCAGTCTGGTCGTAGTTCTGTTGGTGTTAGGGCTTCTCCACTGTGTAAGTTTCATGGGGGGTGGGGATTTGAAAATGGGGATTATCCGACGAATAGGGTATTGAATTGCGGTCCGGACTTGCAAAGAGAGATTGAATTCCCAAAGAGGTTTGATCTTTCACCTTCCATGAAGGACTTGTTGAAGAGAAATGTTACAATGTTTGCTGCTGGTTTTAGAGCAAATACCAAACTGCAGTTGCAGGCGAAGGGAAACCTTCCTGGCCGTAGTGCCATGTCTAATTTGGATTCTCCGGTTGTATCCGGGGCTGATGTCACGGTTGATCAGTGTGGACATTCTCGGTTTCCTGATAACCAAGATGCTGTGAACTCGGTGCTGAGTAAATTTCGTGACTTGAATCTTGATGAGAATTTGGAGTTTGCAGCAGAGGATCAGAAGGATGAGGTGATAGTAAGTATATTTCATCAGATCAAAGATTTGGAGAAACAGGCCAAAGAAAGAAAAGAATGGGCTCATCTGAAAGCACTGCAAGCGGCAAAGAAGCTAAGCGGTGATATGACTGAACTCAAAACGTTACGGATGGAAAGAGAGGAGACCCAAAAGTTGAAGAAAGGGAAACAGGCACTTGAGGACACAACCATGAAGAAACTCTCGGAGATGGAGAATGCTTTGAGAAAGGCTAGTGGTCAAGTGGACCGTGCAAATGGAGCTGTGAGAAGATTAGAGACTGAAAATGCAGAAATCAGAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAGTCCGTGACAGCTTGCTTAGAAGTTGCGAAAAAGGAGAAGAAGTGCTTAAAGAAACTTCTAGCTTGGGAAAAACAGAAGGCTAAGCTACAGAAGGAAGTTTCCAATATGAAAGAGAAGATATCAGAGGCACAAGAAGTGTTGGGTCAGACTTCACAGCGCCAAAAAGAAGCCGAGGTTAAATGGAAGGAGGAGTTGAAGGCTCAAGAAGATGCCTTGGCACTAGTTGAGGAGGAGCGCCGAGCCAAGGAAACAGCTGAATCAAATAATAAGAGGGGATTTGAGGCTTTGCGTCTGAAGATTGACATAGATTTCCAGCGCCACAAGGATGATCTACGCAGACTTGAGCATGATCTTTCACGCCTTAAAGCATCTGTTCATTCTGCTGTGTTGCAGCACCAGTCAATTACTTCACCTGTAAGTGACTTTGAGGGTACAAAGCCTCAAAGAGAGTCAATTGCTAAGCTGCTTCTGGATTTGGATAACCTGGATGATTTATCAGAAAAAGAAGCTAATAACAACAGAGAATGCATTATATGTATGAAAGATGAGGTCTCCGTTGTTTTCTTGCCATGTGCTCACCAAGTCATGTGTGCTAAATGCAGTGATGAGTATGGAAAAAAGGGAAAGGCCTCTTGTCCTTGCTGCCGGGTTCAAATCCAACAGAGAATCCGTGTATTTGGGGCATGCTCTTAG 2178 0.4426 MGCTVREKHIRANRRPRSVKPDSDSSDNKDAISKSIAESGLKPFKYDISRVDSSSSHTLIPLPYPNPNSDETGWGYCTEEQLEEILLKNLEFVYNEAVSKIVALGYDEDAALKVILRNGHCYGGMDVLTNILHNSLSYLNTNGSVAAGVGFGDGVSSNRNSEESEPVFSDLRHLEEYSLAGMVCLLQQVRPNLSKGDAMWCLLMSDLHVGKASTMEIPVPGGAVPSRPPAIVESGQSGRSSVGVRASPLCKFHGGWGFENGDYPTNRVLNCGPDLQREIEFPKRFDLSPSMKDLLKRNVTMFAAGFRANTKLQLQAKGNLPGRSAMSNLDSPVVSGADVTVDQCGHSRFPDNQDAVNSVLSKFRDLNLDENLEFAAEDQKDEVIVSIFHQIKDLEKQAKERKEWAHLKALQAAKKLSGDMTELKTLRMEREETQKLKKGKQALEDTTMKKLSEMENALRKASGQVDRANGAVRRLETENAEIRAEMEASKLSASESVTACLEVAKKEKKCLKKLLAWEKQKAKLQKEVSNMKEKISEAQEVLGQTSQRQKEAEVKWKEELKAQEDALALVEEERRAKETAESNNKRGFEALRLKIDIDFQRHKDDLRRLEHDLSRLKASVHSAVLQHQSITSPVSDFEGTKPQRESIAKLLLDLDNLDDLSEKEANNNRECIICMKDEVSVVFLPCAHQVMCAKCSDEYGKKGKASCPCCRVQIQQRIRVFGACS* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1857 725 Coils Coil 514 548 - -
Psa4g1857 725 PANTHER OS05G0141500 PROTEIN 1 724 IPR046934 -
Psa4g1857 725 SUPERFAMILY RING/U-box 670 717 - -
Psa4g1857 725 Pfam Family of unknown function (DUF6592) 89 213 IPR046527 -
Psa4g1857 725 SMART ring_2 671 710 IPR001841 -
Psa4g1857 725 ProSiteProfiles Zinc finger RING-type profile. 671 711 IPR001841 -
Psa4g1857 725 Coils Coil 553 580 - -
Psa4g1857 725 MobiDBLite consensus disorder prediction 16 31 - -
Psa4g1857 725 Pfam Zinc finger, C3HC4 type (RING finger) 668 716 - -
Psa4g1857 725 Coils Coil 451 492 - -
Psa4g1857 725 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 724 - -
Psa4g1857 725 MobiDBLite consensus disorder prediction 1 32 - -
Psa4g1857 725 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 658 722 IPR013083 -
Psa4g1857 725 Coils Coil 599 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1857 Psa-Chr4 132726123 132731839 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1857 662 721 C3H Transcription Factor Family AT1G73950 41.667 1.77e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1857 - - gmx:100777787 1029.24