Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1847 ATGCCAGTTCCACTTGCCCCTTACCCAACTCCACCACCAGCTCCATATACACCAACTCCAACAAATGGTTCACAGAGTCAACTTGTGTGTTCTGGTTGTAGAAACCTTCTGGTCTATCCAGTTGGAGCTACTTCTGTATGCTGTGCTGTTTGCAATGCTGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCTCAGATAGTTTGTGGAGGATGCCATACTCTACTCATGTACATCCGCGGAGCGACCAGCGTTCAATGCTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAATTGTGGTAACTGCAGGATGCTTCTTATGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTTACCTCAGTTGGGGCTTCAGCAAGCACCACTGAGCAGAAGTTCAGCACCTAA 444 0.4752 MPVPLAPYPTPPPAPYTPTPTNGSQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQIVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTTEQKFST* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1847 147 PANTHER PROTEIN LSD1 1 144 IPR040319 -
Psa4g1847 147 Pfam LSD1 zinc finger 107 131 IPR005735 -
Psa4g1847 147 Pfam LSD1 zinc finger 30 54 IPR005735 -
Psa4g1847 147 Pfam LSD1 zinc finger 69 93 IPR005735 -
Psa4g1847 147 PANTHER PROTEIN LOL1 1 144 - -
Psa4g1847 147 SUPERFAMILY Multiheme cytochromes 30 128 IPR036280 -
Psa4g1847 147 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 27 57 IPR005735 -
Psa4g1847 147 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 104 134 IPR005735 -
Psa4g1847 147 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 66 95 IPR005735 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Psa4g1847 zf-LSD1 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1847 - - qsu:112000975 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1847 4 132277672 132280884 Psa4g1847 4 132277672 132280884 ECH