Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1844 ATGGATTCCCGCTCACCTCCACCACCACCAACCATGATGGTGGGACCCACATCTTACGCTCCGACTAACACCTCCATGATCAGCCCTAATTCCTCCACCACCAACATCATGTCTCCGGCCACCGCTCGTTTTCCTTTCACTTCGCAGCAGCAACCGGACCCGTTCGCCGTCACTCACGACAGCCCTTCTTCGCCGTCCACCCTCGCCAAGAAAAAGCGTGGCCGGCCGAGGAAATACTCCCCGGACGGTAACATTGCCCTTGCTTTGGCTCCGAATCGAGTTTCTTCCCCTGCCGCTGCTACATCCGCTTCTGCTGGAGATTCGGGAAACGCGGAGGCTCCTGCCAAGAAACATAGAGGAAGACCTCCTGGCTCTGGGAAGAAACAGTTAGATGCGCTTGGAGCTGGTGGGATTGGATTCACTCCACACGTAGTCTTGGTGGAGTCTGGTGAGGACATTACGGAAAAAGTTATGGCCTTTAGTCAGTCAGGCCCTCGAACAGTTTGTATTCTTTCTGCCAATGGTGCAGTCAGCAGTGCAACCCTTCGACAGCCATCTGGTGGTATTGCAAGATACGAGGGCCAATTTGAGATCATATCGTTATCAGGTGATATGCACCTATCTGAAAACAGTGGTGAGCATAGCAGACCAAGCAGTTTATACGTTTCTCTTGCAGGGGCTGATGGACGAGTTTTGGGTGGTGCAGTTGCTGGAGTGCTAATTGCAGCCTCAACGATACAGGTCATTGTGGGTAGCTTTATTATGGATTTGAAAAAGTCAAGCTCAAGTATGGTGAAATCTGGGCCTTCTTCAGCACCAACTTCCCAAATGTTGAACTTCGGTGCACCTACAACTCCAACCAGTCCTACTTCTCAAGGGCCTTCAACTGAGTCATCGGAGGAAAATGATCATAATAGTAATTTTAGTAGGGGGCCTGCACTCTACAACAATGCTAATCAGCCTGTTCATAATAATATGCAGCAGATGTACCACCATCCACTATGGGCCGGCCAAACTCATCAGTGA 1026 0.5058 MDSRSPPPPPTMMVGPTSYAPTNTSMISPNSSTTNIMSPATARFPFTSQQQPDPFAVTHDSPSSPSTLAKKKRGRPRKYSPDGNIALALAPNRVSSPAAATSASAGDSGNAEAPAKKHRGRPPGSGKKQLDALGAGGIGFTPHVVLVESGEDITEKVMAFSQSGPRTVCILSANGAVSSATLRQPSGGIARYEGQFEIISLSGDMHLSENSGEHSRPSSLYVSLAGADGRVLGGAVAGVLIAASTIQVIVGSFIMDLKKSSSSMVKSGPSSAPTSQMLNFGAPTTPTSPTSQGPSTESSEENDHNSNFSRGPALYNNANQPVHNNMQQMYHHPLWAGQTHQ* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1844 341 SMART AT_hook_2 116 128 IPR017956 GO:0003677
Psa4g1844 341 SMART AT_hook_2 70 82 IPR017956 GO:0003677
Psa4g1844 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 142 253 IPR005175 -
Psa4g1844 341 ProSiteProfiles PPC domain profile profile. 136 275 IPR005175 -
Psa4g1844 341 MobiDBLite consensus disorder prediction 284 307 - -
Psa4g1844 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 140 254 - -
Psa4g1844 341 MobiDBLite consensus disorder prediction 1 15 - -
Psa4g1844 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 34 311 - -
Psa4g1844 341 MobiDBLite consensus disorder prediction 1 128 - -
Psa4g1844 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 311 IPR039605 GO:0003680
Psa4g1844 341 CDD DUF296 141 253 IPR005175 -
Psa4g1844 341 Gene3D - 142 266 - -
Psa4g1844 341 MobiDBLite consensus disorder prediction 16 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1844 Psa-Chr4 132187125 132197608 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1844 48 341 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 44.643 9.69e-68 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1844 - - var:108323770 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1844 4 132187125 132197608 Psa4g1844 4 132187125 132197608 ECH