Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1843 ATGGCTGGTTTGGATTTAGGAAGTGCATCGCGCTTTATGCAAAACCTTCACAGACAAGACTTGCACCTTCAGCAGCAACATCAGCAACACCATCACGATTCCGAAGAGCAAGAATCGAATCGAGTTGGTGGCGGCGTTGGTGGTGGTGCAGCACCGTTTTCATCCAACGACGAAGATGACCGAAGCCAAGGCTTGGAGTTAGGTTCGGCTGCGGGTCCAGGTGACGTAGTCGGACGTCGTCCACGTGGCAGACCGCCAGGCTCGAAAAACAAGGCGAAACCTCCGGTGATTATCACGAGAGAAAGCGCCAACACTCTCAGAGCTCATATTCTTGAAGTTGCTAGCGGTTCTGATGTTTTCGAATGTGTTACGAACTACGCTCGCCGCCGTCAGCGTGGGATCTGTGTTTTAAGCGGAACTGGCACGGTTACGAATGTTAGTCTCAGGCAGCCTGCGGCGGCTGGTGGTGCTGTGACACTTCATGGAAGATTTGAGATATTGTCTTTGTCTGGATCTTTTCTGCCACCGCCGGCTCCTCCTGGAGCGACTAGTTTGACGATTTATCTTGCAGGAGGTCAGGGACAGGTGGTCGGAGGAAGTGTGGTTGGTGAACTCATTGCGGCGGGACCGGTGATTGTGATTGCTGCTTCGTTTACTAATGTGGCTTATGAGAGGTTGCCTTTGGATGATGAGGAACAGGTTCAGATGCAGACAGTGGCGGGAGGTGGTGGTTCTCAAGGCTCTGGTAGTGGTGGTGCTGGTGGCGTTGGTGGCGTTGGTGGTGGGAATACTAGTCCATTTCCTGATCCATCTTCTGGTTTGCCGTTTTTCAATCTGCCTTTGAATATGCAGAATGTTCAGTTGCCTGTTGACGGTGGTGGTTGGGCGGGAAACAACTCCGCTTCACGTCAACCTTTTTGA 921 0.5223 MAGLDLGSASRFMQNLHRQDLHLQQQHQQHHHDSEEQESNRVGGGVGGGAAPFSSNDEDDRSQGLELGSAAGPGDVVGRRPRGRPPGSKNKAKPPVIITRESANTLRAHILEVASGSDVFECVTNYARRRQRGICVLSGTGTVTNVSLRQPAAAGGAVTLHGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELIAAGPVIVIAASFTNVAYERLPLDDEEQVQMQTVAGGGGSQGSGSGGAGGVGGVGGGNTSPFPDPSSGLPFFNLPLNMQNVQLPVDGGGWAGNNSASRQPF* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1843 306 Pfam Plants and Prokaryotes Conserved (PCC) domain 107 220 IPR005175 -
Psa4g1843 306 SUPERFAMILY AF0104/ALDC/Ptd012-like 103 235 - -
Psa4g1843 306 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 306 IPR014476 GO:0003680
Psa4g1843 306 MobiDBLite consensus disorder prediction 22 43 - -
Psa4g1843 306 CDD DUF296 107 190 IPR005175 -
Psa4g1843 306 MobiDBLite consensus disorder prediction 67 97 - -
Psa4g1843 306 MobiDBLite consensus disorder prediction 23 39 - -
Psa4g1843 306 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 1 306 - -
Psa4g1843 306 ProSiteProfiles PPC domain profile profile. 103 240 IPR005175 -
Psa4g1843 306 Gene3D - 106 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1843 Psa-Chr4 132110330 132112526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1843 1 306 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 63.750 2.29e-96 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1843 - - pvu:PHAVU_003G230600g 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1843 4 132110330 132112526 Psa4g1843 4 132110330 132112526 ECH