Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1828 ATGGTTTGTACTGCCAATGATTTACAACAATGGAAGGATTTTCCCAAAGGACTCAAGGTTCTTCTCCTTCAGGAAGACATTACTTGTGCTTCTGAGATAAGAACAAAGCTTGAGGCCATGGACTATATTGTTTCGATATTCTGCGACGTGAATGAAGCCTTGTCAGCAATCTCAAATAGGCCTGAGGGCTTCCATATAGCCATTGTAGAGGTGAGTTCGCACAGTTGCGAGGGAGGTTTCAAATTTCTTGAGAATACAAAGGACTTGCCAACCATTATGACTTCAAAGAACGATTGTCTGAACACCATGATGAAGTGCATAGCGCTCGGGGCAGTGGAGTTTCTCAGCAAACCACTCTCTGAGGACAAGCTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCGTTCAATGCTGGGGTAAGTGTCCTGTCGGAATCACTGAAACCTGTCAAGGAATCTGTAGTCTCCATCTTGCAGCTCCAAACAGACAATGAACAACACGAGAATAGAGCCTCGGTCGAGATAGAAAAAGTATCTCGGTTTTCTGACAATGACCCCGAGCATTATCCAGCTCCTTCAACCCCACAATTGAAACAGGTGGAAAGATTACTAGACGACGGGGATTGCCAGGAGCAGACTAACTGCTCCACGGAAAAAGAAAGTGGGGAGCATGATGGAGAATCTAAATCTGTCGAAACTACTTGTGAAAATTTGAATGCTGAGAGTACCCGCCAAGAGCAGACTAATTGCTCGATTCAAAAAGAAAGTGGAGAGCATGATGGAGAATCTAAATCTGTCGAAATTACTTGTGAAAAATTGAATGCTGAGAGTACTCGCCAAGAGCAGACTAATTGCTCGACTGAAAAAGAAAGTGGAGAGCATGATGGAGAATCTAAATCTGTCGAAAATACTTGTGAAAATTTGAATGCTGAAAACACTTCTAAGTGTGAGAATGTTGTTTCTCCACATCCACAAAATGTGAAAGTTCTCACCAATAGTGAAAGTAATACTACATCTGCAAATATAGCGGCCGTTCGTAATCATAAATGTGAAATAAAAGCTAATAGGAAGAAGATGAAAGTAGACTGGACACGAGAGCTGCACAAAAAATTTGTGAAGGCAGTGGAACAACTAGGCATTGATCACGCTATTCCTTCTCGCATATTGGATTTAATGAAGGTGGAGGGCTTGACAAGACATAATGTGGCAAGCCATCTTCAGAAATATAGAATGCATAAGAGACATATCTTGCCGAAGCAAGAAGACCAGAAATGGCTAAATCAAAGAGATCCAATGCAAAGGAGCTATTGTCTTCAAAGGCCGATTATGCCTGGTCCTCCGTCATATTATTCTAACCATACCCTTCCTCCAGCTCCTTTATATCCGATGTGGGGACAATCTGGAAGCCAAATGGCCGGCGTGCCTATTTGGCGACCTTCCGGTTACCCCTTGTGGCAGCCTACAGAAAGTTGGCACTGGCAACCATTTCCAGTGATGCATTCAGATACTTGGGGCTGCCCTGTGTTACCACCGCCACCTCAAGCTCAATGCTTTTCCTACACTCAACAGAATATACCTGCCTTGAGCAATGATAATGCAATGGATTACATGATTGGCACGCCATACAGTTCTTTAGACGATTATCCGGAAGAGGAGATTATTGACAAGGTTGTGACGGAGGCAATGAGTAAGCCATGGCTACCTTTGCCGATAGGCCTCAAACCGCCTTCCACAGATAGTGTGTTGACTGAGCTTTCAAGGCAAGGCATTTCCAACATTCCTCCAAGCAATAATAGTTTTATTCCCATTTGA 1812 0.4354 MVCTANDLQQWKDFPKGLKVLLLQEDITCASEIRTKLEAMDYIVSIFCDVNEALSAISNRPEGFHIAIVEVSSHSCEGGFKFLENTKDLPTIMTSKNDCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGVSVLSESLKPVKESVVSILQLQTDNEQHENRASVEIEKVSRFSDNDPEHYPAPSTPQLKQVERLLDDGDCQEQTNCSTEKESGEHDGESKSVETTCENLNAESTRQEQTNCSIQKESGEHDGESKSVEITCEKLNAESTRQEQTNCSTEKESGEHDGESKSVENTCENLNAENTSKCENVVSPHPQNVKVLTNSESNTTSANIAAVRNHKCEIKANRKKMKVDWTRELHKKFVKAVEQLGIDHAIPSRILDLMKVEGLTRHNVASHLQKYRMHKRHILPKQEDQKWLNQRDPMQRSYCLQRPIMPGPPSYYSNHTLPPAPLYPMWGQSGSQMAGVPIWRPSGYPLWQPTESWHWQPFPVMHSDTWGCPVLPPPPQAQCFSYTQQNIPALSNDNAMDYMIGTPYSSLDDYPEEEIIDKVVTEAMSKPWLPLPIGLKPPSTDSVLTELSRQGISNIPPSNNSFIPI* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1828 603 Gene3D - 354 416 - -
Psa4g1828 603 MobiDBLite consensus disorder prediction 232 252 - -
Psa4g1828 603 Pfam Myb-like DNA-binding domain 361 410 IPR001005 -
Psa4g1828 603 SUPERFAMILY CheY-like 16 134 IPR011006 -
Psa4g1828 603 MobiDBLite consensus disorder prediction 213 265 - -
Psa4g1828 603 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Psa4g1828 603 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 358 413 IPR006447 GO:0003677
Psa4g1828 603 SMART REC_2 18 128 IPR001789 GO:0000160
Psa4g1828 603 Gene3D - 18 139 - -
Psa4g1828 603 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 245 IPR044825 GO:0003700|GO:0045893
Psa4g1828 603 PANTHER TRANSCRIPTION ACTIVATOR GLK1 245 280 IPR044825 GO:0003700|GO:0045893
Psa4g1828 603 PANTHER TRANSCRIPTION ACTIVATOR GLK1 280 594 IPR044825 GO:0003700|GO:0045893
Psa4g1828 603 MobiDBLite consensus disorder prediction 286 301 - -
Psa4g1828 603 MobiDBLite consensus disorder prediction 217 231 - -
Psa4g1828 603 SUPERFAMILY Homeodomain-like 357 415 IPR009057 -
Psa4g1828 603 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 280 594 - -
Psa4g1828 603 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 245 - -
Psa4g1828 603 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 245 280 - -
Psa4g1828 603 MobiDBLite consensus disorder prediction 277 301 - -
Psa4g1828 603 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 355 414 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1828 Psa-Chr4 130438861 130443891 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1828 1 597 Response Regulator Gene Family AT4G18020 45.469 1.63e-133 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Psa4g1828 Myb_DNA-binding 3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1828 - - mtr:MTR_4g098870 882.863