Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1795 ATGAAGTGTTTCTTCTTCAAAGAGAAATCCAAATCCGCTCCTGAACTGCAAAACCAAACCAAAAAGAAGACGAACCGCGCAACAAACTCTACCGGCTCTGTGTCTTCGTCAAAGAGTGTGAAGGATTTGTACAAAGAGAAAGAACATAGTTTTAGAGTTTTCACTCTTCAAGAACTTAGAGAAGCCACCAATGGTTTTAACAGGATGCAGAAAATTGGTGAAGGGGGTTTTGGAAGTGTTTATAAAGGATCGATTTTGCCTCCAAATCGACAAGGTGATCCAATTCAAGTTGCCATCAAAAGGCTTAACACGCGTGGATTTCAGGGTCATAAAGAATGGCTTGCAGAAGTTCAATTTCTCAGCATTGTTAATCACCCAAATTTGGTTAAGCTTTTGGGATATTGCTCTGTAGATGGCGAAAGAGGAATCCAACGGCTGTTGGTGTACGAGTACATGCCAAACCGGAGTTTGGAAAACCACCTTTTCAGTAAAACCTTACCGGTTCTTCCATGGAAAACTAGATTAGAGATTATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACATGAAGGATTGGAGATACAGGTGATCTACCGAGATTTCAAATCTTCGAACGTTCTATTGGACGAGGATTTTGACCCGAAGCTCTCAGATTTTGGTCTTGCAAGGGAAGGGCCACAAGGGGATCAAACTCATGTATCTACTGCGGTAGTCGGGACTCAAGGATATGCTGCGCCCGAGTATATCGAAACAGGTCATCTCAAAGTCCAGAGCGACATGTGGAGTTTCGGAGTCGTACTCTACGAGATCCTCACGGGAAGAAGATCATTGGAAAGGAACCGTCCGACAGCTGAACAAAAGCTATTAGATTGGGTAAAACAATATCCTGCAGACAGTAACAGATTCAACATGATAATGGACCCGCGTCTTAGGAACCAATATCCGAATGCCGCAGCGCGTAAAATAGCGAAGTTGGCCGATAGTTGCTTGAAGAAGAATCCAGAAGACAGACCTTCCATGAGTCAGATAGTGGAAGGGTTAAAACAAGCATTGCAATATTCAGAAATGTCAAATGCTCCTCATGATAATGGTGAGTCTTCTCGGTCAAAATTGGTTCGAAAAGGTCAATAG 1131 0.4306 MKCFFFKEKSKSAPELQNQTKKKTNRATNSTGSVSSSKSVKDLYKEKEHSFRVFTLQELREATNGFNRMQKIGEGGFGSVYKGSILPPNRQGDPIQVAIKRLNTRGFQGHKEWLAEVQFLSIVNHPNLVKLLGYCSVDGERGIQRLLVYEYMPNRSLENHLFSKTLPVLPWKTRLEIMLGAAQGLAYLHEGLEIQVIYRDFKSSNVLLDEDFDPKLSDFGLAREGPQGDQTHVSTAVVGTQGYAAPEYIETGHLKVQSDMWSFGVVLYEILTGRRSLERNRPTAEQKLLDWVKQYPADSNRFNMIMDPRLRNQYPNAAARKIAKLADSCLKKNPEDRPSMSQIVEGLKQALQYSEMSNAPHDNGESSRSKLVRKGQ* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1795 376 MobiDBLite consensus disorder prediction 8 41 - -
Psa4g1795 376 CDD STKc_IRAK 72 349 - -
Psa4g1795 376 ProSitePatterns Protein kinases ATP-binding region signature. 72 100 IPR017441 GO:0005524
Psa4g1795 376 SUPERFAMILY Protein kinase-like (PK-like) 48 346 IPR011009 -
Psa4g1795 376 ProSiteProfiles Protein kinase domain profile. 66 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g1795 376 Gene3D Transferase(Phosphotransferase) domain 1 152 371 - -
Psa4g1795 376 PANTHER OS01G0588500 PROTEIN-RELATED 17 372 - -
Psa4g1795 376 MobiDBLite consensus disorder prediction 17 39 - -
Psa4g1795 376 Pfam Protein tyrosine and serine/threonine kinase 69 346 IPR001245 GO:0004672|GO:0006468
Psa4g1795 376 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL20-RELATED 17 372 - -
Psa4g1795 376 MobiDBLite consensus disorder prediction 353 376 - -
Psa4g1795 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Psa4g1795 376 Gene3D Phosphorylase Kinase; domain 1 36 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1795 Psa-Chr4 126600627 126604037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1795 3 347 Glycoside Hydrolase AT3G07070 43.697 6.89e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Psa4g1795 PK_Tyr_Ser-Thr 1.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1795 - K00924 gmx:100305403 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1795 4 126600627 126604037 Psa4g1795 4 126600627 126604037 ECH
Psa2g3990 2 414667748 414670610 Psa4g1795 4 126600627 126604037 PCT