Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1766 ATGTCTCTGTATCTTTGTTTTTCATCTCAAAATTATCTTGTTTATTGCTTCAAAGTAAAAAATAAAAGTCATTGTTTATTGTATTTGATTGTGTTCGTTCATATATATTTAAGACAAATGGAGTTTGGTTTTAAGTATCAAATTAGCCTTGTTTGTGTTATACTGTTATTTCCAGTACTATGTAACTGCAACAAAGAATATTATGCCAAATCAAGAGCTTCCTATTATGGCACTTCTGACGGCTATGGAAATTCAAGGGGAGCTTGCGGTTTTGGAGACTATGGAAGGATAGTCAATGACGGCAGTGTCGCAGCTGTTTCTGCCAAGTTGTGGAAGAATGGAGGAGGATGCGGTGCATGTTATCAAGTGAGATGCAAAATACCACAATATTGTGATGATAATGGAGCATATGTGGTGGTGACAGACTATGGTGAGGGAGATAGAACTGATTTCATATTGAGTCCACGTGCCTTTTCAAGATTGGGGCGCAATGCAGTTACATCAGAAAAATTAAAGAAATATGGAGTGTTGGATGTTGAATATAAAAGGGTTCCTTGTACATTTAAAGGCAACAATATTGTATACGAAATCAATGAAAATAGTAGAAACCCGGGCTATTTCGCTATCAATATTCTTTATGTTGGAGGAACATACGATGTTACTGCTGTTGAGATCTGGCAGAAACAACAACACCAATGGGAAGCTATGCGTAGATCTTATGGTGCTGTTTTTGACTTTGCTAACCCACCAGAAGGTGAAATCCGATTGAGGTTTCAAGTGAGTAGCAATGTTGGGTCCAATTGGGTGGGATCACGGTTCACAATACCTGCAGGTTGGAAGGCAGGTGCTACTTATTCCACCAAGATTCAGCCTTATTAA 879 0.3823 MSLYLCFSSQNYLVYCFKVKNKSHCLLYLIVFVHIYLRQMEFGFKYQISLVCVILLFPVLCNCNKEYYAKSRASYYGTSDGYGNSRGACGFGDYGRIVNDGSVAAVSAKLWKNGGGCGACYQVRCKIPQYCDDNGAYVVVTDYGEGDRTDFILSPRAFSRLGRNAVTSEKLKKYGVLDVEYKRVPCTFKGNNIVYEINENSRNPGYFAINILYVGGTYDVTAVEIWQKQQHQWEAMRRSYGAVFDFANPPEGEIRLRFQVSSNVGSNWVGSRFTIPAGWKAGATYSTKIQPY* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1766 292 Gene3D - 187 288 IPR036749 -
Psa4g1766 292 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 205 287 IPR007117 -
Psa4g1766 292 Gene3D - 61 186 IPR036908 -
Psa4g1766 292 SUPERFAMILY Barwin-like endoglucanases 60 191 IPR036908 -
Psa4g1766 292 SUPERFAMILY PHL pollen allergen 192 286 IPR036749 -
Psa4g1766 292 PRINTS Expansin/Lol pI family signature 67 82 IPR007118 GO:0005576
Psa4g1766 292 PRINTS Expansin/Lol pI family signature 85 103 IPR007118 GO:0005576
Psa4g1766 292 PRINTS Expansin/Lol pI family signature 107 125 IPR007118 GO:0005576
Psa4g1766 292 PRINTS Expansin/Lol pI family signature 174 190 IPR007118 GO:0005576
Psa4g1766 292 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Psa4g1766 292 PRINTS Expansin/Lol pI family signature 273 287 IPR007118 GO:0005576
Psa4g1766 292 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 86 191 IPR007112 -
Psa4g1766 292 PANTHER EXPANSIN-B3 43 290 - -
Psa4g1766 292 SMART dpbb_1 103 181 IPR007112 -
Psa4g1766 292 Pfam Expansin C-terminal domain 195 269 IPR007117 -
Psa4g1766 292 PANTHER EXPANSIN-B1-LIKE PROTEIN 43 290 - -
Psa4g1766 292 Pfam Lytic transglycolase 104 181 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1766 Psa-Chr4 125330822 125332476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1766 40 289 Expansin Gene Family AT4G17030 51.600 4.07e-92 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1766 - - gmx:100779487 354.755