Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1762 ATGGGTAAACAAGGACCTTGCTATCACTGTGGCGTTTCAAGCACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCAATTTTGTGCAATGCATGTGGTTCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACCCCTTTACATGCTCGAACAGAACCTAATGATTATGAAGATCAAAGAGTTTCGAGGTTGAAGATTGTATCGGTGAATAAGAACAAAGAAGTGAGATTGGTTAAACGAGAGCAGAACCATGATAATGGTTATTCTGCATCTCGATGGCTCACCCCTGAATATAATCAAGGATTTCAAAAGGTTGTGGATGAGGATACAAGTAATAGATCAAGTTCAGGGTCAGCCATCTCTAATTCTGAAAGCTGTGTTCAATTTGGTGGCACCGATGCTAGTGATTTGACAGGTGCTTCTCAATCAGTGGTCTGGGATACTGTGGTGCCGTCAAAAAAGAGAACATGTGCTGGTCGTCTGAAGCATTCTTCTGTTGAGAAGCTCACAAAAGAATTGTGTAATATTCTTCACGAACAGCAACAACAGTCTTGTTTTTCTGCTTCTTCTGAAGAGGAACTTCTTTATGAAAATGAAGCGCCAATGGTCTCAGTTGAGATAGGACATGGAAGCATGCTCATTAGGCATCCTAGCTCTATAGCTCGAGATGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCTTAATGAATGAGGCATATTCGTGTTATGGTCCGATTCCCATGCTTAGTGATTACACTGGCATGAATTTCTCTTCTCGGGGAGTTGCAAAGGTCGGAAACTCAGCTGGCCAAAGAATGAAGCAAGAGAAACTTGAGAGGAACAAGTCTCAGCTTGAAAAACTAGAAGTTCTTGGAAATCATGATTCACCACTGGGCTTAATAAATTCAAATGATGTGGTGAACTATGAGGAGTTTTCAAGAAACTTGACAGATGAAGAGCAGCAGCAATTACTGAAGTATCTCCCTGTGGTTGATGCTGCAAAACTTCCTGATAGGGAAGGTGTATTCGATAACTCTTTGTTGGGGGCAAACCCTGAAGATTGTAAGACGCTGAAAAGGCTTGCATTGTCTAATCTCTCAAAGTCAAAATGGGTAGAACACTATAATTTACTCAAGAATGATGGAAACAAAGCTGAAAAATGTAATGATATGGAATCTCCTGCCGTGGCATCAAGTAATGTTAAGAGATTGCGTGTCGGCCAAAACCAAAATTTTCCAGAATTGAAGGCAACAATGAGGAGTCCCAAAAGGGTCATCATGAAAGCTAGCAGTGGCGGAAAAGAAATTGTAGACGGCTCTAGCATCAGTGGTGGCAAAGAAATTGTAGACGGCTCTAACATCTTTGTTAACGATCATGATCTGCTACTAGATTTTCCATCCAACAATTCTTTTCCACAGGCAGAGCTCTTGCTCCCAACTTCTAGCTTGGTTGCTCAAGGAAGCACCAGTAGTAGCTCGGTACACTCTCGTGTTACTCGTCCTTGA 1521 0.4201 MGKQGPCYHCGVSSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARTEPNDYEDQRVSRLKIVSVNKNKEVRLVKREQNHDNGYSASRWLTPEYNQGFQKVVDEDTSNRSSSGSAISNSESCVQFGGTDASDLTGASQSVVWDTVVPSKKRTCAGRLKHSSVEKLTKELCNILHEQQQQSCFSASSEEELLYENEAPMVSVEIGHGSMLIRHPSSIARDEESEASSLSVDNKQCLMNEAYSCYGPIPMLSDYTGMNFSSRGVAKVGNSAGQRMKQEKLERNKSQLEKLEVLGNHDSPLGLINSNDVVNYEEFSRNLTDEEQQQLLKYLPVVDAAKLPDREGVFDNSLLGANPEDCKTLKRLALSNLSKSKWVEHYNLLKNDGNKAEKCNDMESPAVASSNVKRLRVGQNQNFPELKATMRSPKRVIMKASSGGKEIVDGSSISGGKEIVDGSNIFVNDHDLLLDFPSNNSFPQAELLLPTSSLVAQGSTSSSSVHSRVTRP* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1762 506 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Psa4g1762 506 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Psa4g1762 506 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Psa4g1762 506 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 345 506 - -
Psa4g1762 506 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 343 - -
Psa4g1762 506 CDD ZnF_GATA 6 55 IPR000679 GO:0006355|GO:0043565
Psa4g1762 506 Gene3D - 3 85 IPR013088 GO:0006355|GO:0008270
Psa4g1762 506 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Psa4g1762 506 PANTHER OSJNBB0038F03.10 PROTEIN 345 506 IPR044589 -
Psa4g1762 506 PANTHER OSJNBB0038F03.10 PROTEIN 1 343 IPR044589 -
Psa4g1762 506 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1762 Psa-Chr4 125265391 125270718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1762 1 482 C2C2-Gata Transcription Factor Family AT4G17570 47.238 2.51e-127 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa4g1762 GATA 1.6e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1762 - - gmx:100799745 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g4005 2 415201346 415206093 Psa4g1762 4 125265391 125270718 PCT