Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1729 ATGGCTAACGCTGAAGAAGTTTCAGCTCTTAAAAGCATCAAACTGCATCTTCTTGGTGAATTTTCACCACTTCCATCTCCAATTTCACAACCTTGGAGTTTTGATTTTGATTTTGATTTTCAATTTCAAACCAATTCTCAACCCCAAACAAACTCTTCCACTTTTGATTCTTCAATCTCTTATTTCACAAATCTTATTGAATCAGAGACACGTATTCCGGTCTTTGAAAATGACTCCAAGACTCAACCAATTGAACCGGCTAGTCCTGAAACCCTAATTTCTCATACTCAGAAAATCGTAGAGAAGAAGCCTCAACTGAATCGTAAACCATCGCTGAAAATCGCTCTACCGAATAAAACCGAATGGATCCAATTCGGAAACCCGGATCCGAACCCGGAGGTGGTTGTTCAGAAACCGGAAGTTGTTGAGAAACAGCACTACAGAGGAGTTAGACAAAGACCGTGGGGAAAGTTCGCCGCCGAGATCCGCGATCCGAACAAACGCGGCTCAAGAGTTTGGCTTGGAACTTTCGAAACGGCTATCGAAGCCGCCAAAGCCTACGATCGTGCCGCTTTTAGGCTTCGTGGATCTAAAGCGATTCTCAACTTTCCATTAGAAGTCAACGCCATGGCGGCAGCGGCGGCGGTGGAGAACTCCGGCGAGAACAAAAAACGTTGCCGTGAAGAGGAAGAGGATGATGTAGTGGAAGTGAAACCGGTGGTGAAAAAGGAGAAAACGGAGGAATTTGATGTAAACTGTATTAAAGAGATGCCGTTAACGCCGTCAATTTGGACTGGGTTTTGGGATGTTGATGTAAAGGGAACGTTCAGCGTTCCACCGTTATCGCCGTTATCTTCCTTTTGTTTTTCACCTCTAGTGGCTGTGTGA 888 0.4482 MANAEEVSALKSIKLHLLGEFSPLPSPISQPWSFDFDFDFQFQTNSQPQTNSSTFDSSISYFTNLIESETRIPVFENDSKTQPIEPASPETLISHTQKIVEKKPQLNRKPSLKIALPNKTEWIQFGNPDPNPEVVVQKPEVVEKQHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFETAIEAAKAYDRAAFRLRGSKAILNFPLEVNAMAAAAAVENSGENKKRCREEEEDDVVEVKPVVKKEKTEEFDVNCIKEMPLTPSIWTGFWDVDVKGTFSVPPLSPLSSFCFSPLVAV* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1729 295 Gene3D AP2/ERF domain 145 206 IPR036955 GO:0003700|GO:0006355
Psa4g1729 295 SUPERFAMILY DNA-binding domain 146 206 IPR016177 GO:0003677
Psa4g1729 295 PRINTS Ethylene responsive element binding protein signature 147 158 IPR001471 GO:0003700|GO:0006355
Psa4g1729 295 PRINTS Ethylene responsive element binding protein signature 186 206 IPR001471 GO:0003700|GO:0006355
Psa4g1729 295 Pfam AP2 domain 146 196 IPR001471 GO:0003700|GO:0006355
Psa4g1729 295 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 282 - -
Psa4g1729 295 CDD AP2 145 204 IPR001471 GO:0003700|GO:0006355
Psa4g1729 295 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 4 282 - -
Psa4g1729 295 SMART rav1_2 146 210 IPR001471 GO:0003700|GO:0006355
Psa4g1729 295 ProSiteProfiles AP2/ERF domain profile. 146 204 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1729 Psa-Chr4 123023516 123025722 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1729 1 285 AP2-EREBP Transcription Factor Family AT4G17490 47.260 3.48e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa4g1729 AP2 3.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1729 K09286 - gmx:100800453 329.331