LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa4g1724	ATGGCTAACGCAGATGAAGTTTCAGCTCTTAAACGTATCAAACTGCATCTTCTTGGTGAATTTTCACCACTTCCATCTCCTATTTCACAACCTTGGAGCTTTGATTTTGATTTTCAATTTCAAACAAACCAAACCACTTGTGATTCTTCAATCTCTTTGGATCATTACTTCACTGATCTTCTTCAAACAGAGACACAGATTCCGATCTTTGAATTCGACTCCAAACCTCAAACAACTGAGCCTGAGAGCCCTAAAGCGCTAACATCTCATCCTCAGGCAACGGTGGAGAAGACTCCTCAACTGAAGCGAAAACCGTCGTTGGAAATCGCTCTCCCGAATAAAACCGAATGGATCCAATTCAGAAAGCCAGATCCGAAACCGGAAGCGGTTGTACAGAAGCCGGAAGTCGCTGAGAAACAGCACTACAGAGGAGTTAGACAGAGACCGTGGGGAAAGTTCGCCGCCGAGATCCGCGACCCGAACAAACGCGGCTCGAGGCTGTGGCTTGGAACTTTTGAAACTGCTATCGAAGCCGCGAAAGCCTACGATCGTGCCGCTTTTAGGCTTCGTGGATCTAAAGCGATTCTCAACTTTCCACTAGAAGTCAACGCCATGGCGGCGGCGGAAAACTCCGGCGAGAACAAAAAGCGTTGCCGGGACGAGGAAGAGGATGATGTAGTGGAAGTGAAACCAGTGGTGAAAAAGGAGAAAACGGAGGAATTTGATGTAAACTGTATTAAAGAGATGCCGTTAACGCCGTCAACTTGGACTGGGTTTTGGGACGTTGATGTGAAGGGGATGTTCAGCGTTCCACCGTTATCGCCGTTATCTTCCTTTTGTTTTTCACCTCTAGTGGCTGTGTGA	864	0.4722	MANADEVSALKRIKLHLLGEFSPLPSPISQPWSFDFDFQFQTNQTTCDSSISLDHYFTDLLQTETQIPIFEFDSKPQTTEPESPKALTSHPQATVEKTPQLKRKPSLEIALPNKTEWIQFRKPDPKPEAVVQKPEVAEKQHYRGVRQRPWGKFAAEIRDPNKRGSRLWLGTFETAIEAAKAYDRAAFRLRGSKAILNFPLEVNAMAAAENSGENKKRCRDEEEDDVVEVKPVVKKEKTEEFDVNCIKEMPLTPSTWTGFWDVDVKGMFSVPPLSPLSSFCFSPLVAV*	288

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa4g1724	287	Gene3D	AP2/ERF domain	140	201	IPR036955	GO:0003700\|GO:0006355
	Psa4g1724	287	MobiDBLite	consensus disorder prediction	76	102	-	-
	Psa4g1724	287	CDD	AP2	140	199	IPR001471	GO:0003700\|GO:0006355
	Psa4g1724	287	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	4	274	-	-
	Psa4g1724	287	SUPERFAMILY	DNA-binding domain	141	201	IPR016177	GO:0003677
	Psa4g1724	287	SMART	rav1_2	141	205	IPR001471	GO:0003700\|GO:0006355
	Psa4g1724	287	Pfam	AP2 domain	141	191	IPR001471	GO:0003700\|GO:0006355
	Psa4g1724	287	ProSiteProfiles	AP2/ERF domain profile.	141	199	IPR001471	GO:0003700\|GO:0006355
	Psa4g1724	287	MobiDBLite	consensus disorder prediction	76	96	-	-
	Psa4g1724	287	PRINTS	Ethylene responsive element binding protein signature	142	153	IPR001471	GO:0003700\|GO:0006355
	Psa4g1724	287	PRINTS	Ethylene responsive element binding protein signature	181	201	IPR001471	GO:0003700\|GO:0006355
	Psa4g1724	287	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6	4	274	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa4g1724	Psa-Chr4	122744695	122746159	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa4g1724	1	287	AP2-EREBP Transcription Factor Family	AT5G47230	43.293	3.23e-62	197

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Psa4g1724		AP2	8.3e-15	CL0081