Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1720 ATGCGTATAGAGGAATTGAAAGGAGGCGAGGTTGAAGAAGGTGGAGAGGAAGGGAAATGGAGCTTTGTTGGTTCCGATACGAAGAGGGTTTTGGTTGGAGCAGGCGCTCGAGCGCTATTCTATCCCACGCTTGTTTATAATGTCGTTAGGAATAGGCTTCAGGCTGAGTTTCGATGGTGGGATAAGGTTGACGAGTTTGTATTGTTAGGTGCGGTTCCATTTCCTATTGATGTTCCTCGCTTGAAAGATCTTGGTGTTCGTGGCGTCATCACATTGAATGAGTCATACGAGACTTTAGTTCCAACCACATTATATTATGCTCATGGGATTGATCATCTGGTGATTCCTACTAGAGATTACTGTTTTGCTCCACCACTAAATGACATATGCCGCGCTGTTGATTTCATACATAAAAATGCATTGTCTGGACGTACTACCTATGTCCACTGCAAAGCTGGACGGGGTCGCAGCACAACTATTGTTATTTGTTATCTGGTGCACCACAAACTGATGTCACCTGATGCTGCATATGAATATGTAAAGTCAATTCGGCCAAGGGTGCTTTTAGCTTCCTCTCAGTGGCAAGCTGTCCAGGACTACTACCGCCACCTTATTGTGAGGAGGGTTGTTGGATTTTCGCCTGTAGCTGATCTATTAGTAAAGGCTTCTGAGGTCTCAGCAGCTTCACAAGATCTTGTAAAATTTGATGACAATTCTGTAGTTGTGGTAACAGAGAAAGATCTTGAAGGATACGACCCAAATTCTCATTCAGTAACCATGTCAAGTGAAATATGGGCAGATTTGAGTGTTGTTTATCGTGTGCGAGTTGCTGGAGAGGCCGCATTTGCAAGAATATCATGCCTTTGGCTGCGATATGGTACCGACCAGAAGATTTCTGCAGAAAAACTAAGCAGAGAAAGCAGTTGCTCCATCAGAAGGAATCACTTGGGAGGAATTAGTGTTGACATCCATGTGTACTGA 981 0.4404 MRIEELKGGEVEEGGEEGKWSFVGSDTKRVLVGAGARALFYPTLVYNVVRNRLQAEFRWWDKVDEFVLLGAVPFPIDVPRLKDLGVRGVITLNESYETLVPTTLYYAHGIDHLVIPTRDYCFAPPLNDICRAVDFIHKNALSGRTTYVHCKAGRGRSTTIVICYLVHHKLMSPDAAYEYVKSIRPRVLLASSQWQAVQDYYRHLIVRRVVGFSPVADLLVKASEVSAASQDLVKFDDNSVVVVTEKDLEGYDPNSHSVTMSSEIWADLSVVYRVRVAGEAAFARISCLWLRYGTDQKISAEKLSRESSCSIRRNHLGGISVDIHVY* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1720 326 CDD PTPMT1 59 203 IPR044596 GO:0004721
Psa4g1720 326 PANTHER - 2 326 - -
Psa4g1720 326 Gene3D Protein tyrosine phosphatase superfamily 59 209 IPR029021 -
Psa4g1720 326 Pfam Dual specificity phosphatase, catalytic domain 99 202 IPR000340 GO:0008138|GO:0016311
Psa4g1720 326 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 2 326 - -
Psa4g1720 326 SMART ptp_7 101 212 IPR003595 -
Psa4g1720 326 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 51 204 IPR029021 -
Psa4g1720 326 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
Psa4g1720 326 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Psa4g1720 326 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Psa4g1720 326 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1720 Psa-Chr4 122637596 122641623 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1720 4 326 Protein tyrosine phosphatase (PTP) family AT2G35680 57.692 4.98e-131 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1720 - - gmx:100790413 544.273