Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1717 ATGATGGTTGAAAAGGAAGACTTGGCTCTGAGTCTAAGCTTGAACTTCTTTCACAAACCTCACCCTCTCAATCTCATCTCTTCCTCAGATCGAAACTCTCATACATGCAGAAACGAAGATGGAAGATTCCTACGAGGATTCGACGTGAATCGCTTACCATCTACCGTTATCGAACACGAAGAAGAAGAAGAAACAGGAGTTTCATCTCCGAACAGCACAGTTTCAAGTGTTAGCGGAAAACGAAGCGAGAGAGAAGATCATGACGTGGACAATAGAGGAAATATCAGCGACGATGAAGACGCTGAAACCGCTAGGAAAAAACTCAGACTCTCTAAAAACCAATCCGCTATTCTCGAAGAAACTTTCAAACAACACAATACCCTTAATCCCAAGCAAAAGTTGGCACTTGCAAAGCAACTTGGGCTTCGTCCTAGACAAGTTGAAGTCTGGTTTCAAAATAGAAGAGCTAGGACAAAGCTGAAGCAAACGGAGGTTGATTGTGAAGTGTTGAAAAGGTGTTGTGAAAATCTAACGGATGAAAATAGAAGACTACACAAGGAAGTTCAAGAGCTTAGAGCACTGAAACTTTCCCCTCAATTTTATATGCAAATGACTCCACCAACAACTCTTACTATGTGCCCTTCTTGCGAGCGCGTGGGTGTTCCATCCAACGGTGTTGATGCTATCTCTCAAGCCCATCCTCGGGCCGTACACATGGGCCCGTGGGCTTCCGCTGCTCCTCCTGCGCATAGGATGTTTGATGTTTTCCGTCAATGA 777 0.4453 MMVEKEDLALSLSLNFFHKPHPLNLISSSDRNSHTCRNEDGRFLRGFDVNRLPSTVIEHEEEEETGVSSPNSTVSSVSGKRSEREDHDVDNRGNISDDEDAETARKKLRLSKNQSAILEETFKQHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTDENRRLHKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVGVPSNGVDAISQAHPRAVHMGPWASAAPPAHRMFDVFRQ* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1717 258 Coils Coil 160 194 - -
Psa4g1717 258 Pfam HD-ZIP protein N terminus 24 85 IPR006712 GO:0005634
Psa4g1717 258 Pfam Homeodomain 105 159 IPR001356 GO:0003677
Psa4g1717 258 PRINTS Lambda-repressor HTH signature 132 141 IPR000047 GO:0003677
Psa4g1717 258 PRINTS Lambda-repressor HTH signature 141 157 IPR000047 GO:0003677
Psa4g1717 258 SMART HOX_1 103 165 IPR001356 GO:0003677
Psa4g1717 258 SUPERFAMILY Homeodomain-like 96 162 IPR009057 -
Psa4g1717 258 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 5 250 - -
Psa4g1717 258 CDD homeodomain 105 162 IPR001356 GO:0003677
Psa4g1717 258 ProSitePatterns 'Homeobox' domain signature. 136 159 IPR017970 GO:0000981|GO:0006355
Psa4g1717 258 PANTHER - 5 250 - -
Psa4g1717 258 Gene3D - 109 159 - -
Psa4g1717 258 ProSiteProfiles 'Homeobox' domain profile. 101 161 IPR001356 GO:0003677
Psa4g1717 258 SMART halz 161 204 IPR003106 GO:0006355|GO:0043565
Psa4g1717 258 Pfam Homeobox associated leucine zipper 161 195 IPR003106 GO:0006355|GO:0043565
Psa4g1717 258 MobiDBLite consensus disorder prediction 59 106 - -
Psa4g1717 258 MobiDBLite consensus disorder prediction 79 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1717 Psa-Chr4 122451200 122452574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1717 1 257 Homeobox Transcription Factor Family AT4G16780 60.211 6.97e-98 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa4g1717 HD-ZIP_N 1.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1717 K09338 - gmx:100813367 357.836