Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1710 ATGTATGGAAACAATAACTTTGATTCCGATTTTGCCCTTCTAGACTCTATTCGCCGCCACTTGTTGGGTGAGTCCGAATCAATATTCGGAGCTCCAACAACTTCTTCGGGTAATACTAATACCCGGGTTTTCTCTCGGAGCTCCAGTTTCAGTAGCTTATATCCATGTTTGACTGATAATTGGGGCGATTTACCGCTTAAAGAAGATGATTCTGAAGATATGGTGCTCTATGGTGTTCTCCGTGATGCCGTAAACGTCGGGTGGGTTCCGTCTCTCGAAGTCGGGTCACCCGAGAGTATTTCATCGGGTTTTCCGTTGGAATTGGTAAAACCGGAGCCAAATGTCATAGATATCATGCCGGTTGAGAATATTTCCACAGTGGTGCCTACGGCGGTTCAAGTGGTTCCTCAGGGGCCCAAAGCTGCTCCGGTTAAAGGGAAGCACTACCGCGGCGTGAGACAACGGCCGTGGGGGAAATTCGCGGCGGAGATTCGTGACCCGGCTAAGAACGGAGCTAGGGTTTGGCTTGGAACATTCGAAACCGCTGAGGATGCGGCGTTGGCTTACGATAGAGCTGCGTATAGGATGAGAGGATCGAGAGCTTTGCTGAATTTTCCTCTTCGGGTTAACTCCGGTGAGCCCGACCCGGTAAGGATTACTTCTAAAAGATCTTCACCGGAACGTTCTTCTTCGTCTTCATCGTCGGAAAGTAATTCTCCGGCGAAGAAGAAGAAGGTAATGGCAGCTCAAGTGACACAGTTGACACGTGGAGGACAGTTATTGGTTTCTTAA 792 0.4912 MYGNNNFDSDFALLDSIRRHLLGESESIFGAPTTSSGNTNTRVFSRSSSFSSLYPCLTDNWGDLPLKEDDSEDMVLYGVLRDAVNVGWVPSLEVGSPESISSGFPLELVKPEPNVIDIMPVENISTVVPTAVQVVPQGPKAAPVKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRITSKRSSPERSSSSSSSESNSPAKKKKVMAAQVTQLTRGGQLLVS* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1710 263 PRINTS Ethylene responsive element binding protein signature 149 160 IPR001471 GO:0003700|GO:0006355
Psa4g1710 263 PRINTS Ethylene responsive element binding protein signature 172 188 IPR001471 GO:0003700|GO:0006355
Psa4g1710 263 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 32 252 - -
Psa4g1710 263 ProSiteProfiles AP2/ERF domain profile. 148 206 IPR001471 GO:0003700|GO:0006355
Psa4g1710 263 MobiDBLite consensus disorder prediction 214 250 - -
Psa4g1710 263 Pfam AP2 domain 148 198 IPR001471 GO:0003700|GO:0006355
Psa4g1710 263 SUPERFAMILY DNA-binding domain 148 208 IPR016177 GO:0003677
Psa4g1710 263 MobiDBLite consensus disorder prediction 223 241 - -
Psa4g1710 263 Gene3D AP2/ERF domain 147 209 IPR036955 GO:0003700|GO:0006355
Psa4g1710 263 PANTHER DNA-BINDING DOMAIN 32 252 IPR044808 GO:0003700|GO:0009873
Psa4g1710 263 CDD AP2 147 206 IPR001471 GO:0003700|GO:0006355
Psa4g1710 263 SMART rav1_2 148 212 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1710 Psa-Chr4 120160434 120185490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1710 9 262 AP2-EREBP Transcription Factor Family AT4G17500 53.684 6.27e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa4g1710 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1710 K09286 - gmx:100803653 308.531