Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1693 ATGGAAAGACACAAATGCAAGCTATGTTCAAGGACTTTTAGCAATGGAAGAGCACTTGGTGGACACATGAAGGCTCATCTTGCCATAGCTAGGTCTCAGAAACAACAAACTCTTTTGTTCTCAAGCTCTTCATCAGAATCAGAACAAGAACAAGAACAAGGAAAAATATGGATTGGTTATGGTTTGAGAGAGAATCCAAGGAAGAGTCTGAAAACTGCAGATCCTGGATTTTCTTTGAAACATGACCAAACTGAGTCTGTTATTGTTCAAGATAGAGAAAGTGAGACTGAGTCGAAGAACAATCCGACTCGTCAACAACGATCCAAACGGACCAGAAAACTCAGCAGCAGCAACAACAACAACGGGAATTTTGAATTGAAGAAACCGAAGATGAGTTTCACTGTGAGAACAACTCTGTCAACATTCAATGATACTGAACCTGTTGAACCTGTTGAACCTGTTGAACCTGTGAGTTCAGTTTCTGATACTTCTCCTGAAGAAGACGTTGCTATGTGTCTCATGATGCTGTCAAGAGACAAATGGAGCAGGAGGAGCAACATCAACAATGCGGTGGAACAACAAGAAGAAGAGGGATCGGTGGAGAAAATACCGGAGGCGAAGTTGTTGAAACGAGTTCGAGGAAAGCATTTATGTGAAAACTGTAGGAAAATGTTCCGGTCTTCAAGAGCATTGGGAAGTCATAGAAGTGTTTGTTGTCGCCATGAAGCGTCAAATGGTAACAGTAACTATGACAAGATTTTCAAATGTCCGTTTTGTTTCAAGGTGTTTGGTTCCGGTCAAGCACTCGGTGGTCACAAGAGATCTCATTTGATTCCTTCCTCGTCTAACTCGGCAGCCAATGTTAATGTTAATGTTAATCTTCCGGCTAGATTCAAAGAGAGTTTCATAGATCTCAATTTACCAGCTCCGCTCGAAGAAGAAGACGATCTTAGCGTCGTTTCAGAAGCCTAA 972 0.4177 MERHKCKLCSRTFSNGRALGGHMKAHLAIARSQKQQTLLFSSSSSESEQEQEQGKIWIGYGLRENPRKSLKTADPGFSLKHDQTESVIVQDRESETESKNNPTRQQRSKRTRKLSSSNNNNGNFELKKPKMSFTVRTTLSTFNDTEPVEPVEPVEPVSSVSDTSPEEDVAMCLMMLSRDKWSRRSNINNAVEQQEEEGSVEKIPEAKLLKRVRGKHLCENCRKMFRSSRALGSHRSVCCRHEASNGNSNYDKIFKCPFCFKVFGSGQALGGHKRSHLIPSSSNSAANVNVNVNLPARFKESFIDLNLPAPLEEEDDLSVVSEA* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1693 323 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 323 - -
Psa4g1693 323 MobiDBLite consensus disorder prediction 145 164 - -
Psa4g1693 323 Gene3D Classic Zinc Finger 179 284 - -
Psa4g1693 323 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 323 IPR044303 GO:0006355
Psa4g1693 323 SUPERFAMILY beta-beta-alpha zinc fingers 3 276 IPR036236 -
Psa4g1693 323 MobiDBLite consensus disorder prediction 85 104 - -
Psa4g1693 323 ProSitePatterns Zinc finger C2H2 type domain signature. 256 276 IPR013087 -
Psa4g1693 323 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Psa4g1693 323 MobiDBLite consensus disorder prediction 112 129 - -
Psa4g1693 323 Pfam C2H2-type zinc finger 254 277 - -
Psa4g1693 323 Pfam C2H2-type zinc finger 3 28 - -
Psa4g1693 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Psa4g1693 323 MobiDBLite consensus disorder prediction 72 129 - -
Psa4g1693 323 SMART c2h2final6 254 276 IPR013087 -
Psa4g1693 323 SMART c2h2final6 216 241 IPR013087 -
Psa4g1693 323 SMART c2h2final6 4 26 IPR013087 -
Psa4g1693 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 276 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1693 Psa-Chr4 119212868 119214756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1693 1 320 C2H2 Transcription Factor Family AT3G60580 38.690 5.00e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa4g1693 zf-C2H2_6 2.7e-09 CL0361