Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1667 ATGTCCTCCTCTTCTTTATCCTTGGACCACCTCCCTCCTTCCGAGCAACTTTGTTATGTCCACTGCAACATTTGTGACACCATCCTTGCTGTGAGTGTTCCTTGCACTAGCTTGTTCAAGACTGTTACTGTGAGATGTGGTCATTGCACTAATCTCCTTCCTGTTAACATGCGTGCACTGCTTCTTCCATCTCCTAACCAGTTTCATTTGGGACACTCTTTCTTCTCCCCAACTCATAACCTTCTGCAGGAGGAGATGCCAAACCAAGTTCCAAATTTCATGATGAACCTCACAAACACACCAAATGAGTTCTCCATGCCTCCTAGGACTGTTCCTGATGAGCTTCCAAGGCCACCGATCATAAACAGACCTCCAGAAAAGAGACAGAGAGTTCCATCAGCATACAACCGCTTCATCAAAGATGAGATCCAACGCATTAAGTCTGTCAATCCTGATATCACTCACAGGGAAGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCTGATCAGAATATGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGGAGATGGTCAGGTTCTGATGAAAGATGGGTTTTATGCTTCTGCTAATCTTGGAGTTTCGCCATACTAA 645 0.4574 MSSSSLSLDHLPPSEQLCYVHCNICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSFFSPTHNLLQEEMPNQVPNFMMNLTNTPNEFSMPPRTVPDELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQNMKKTNVCQQEGGDGQVLMKDGFYASANLGVSPY* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1667 214 PANTHER PROTEIN YABBY 4 1 212 - -
Psa4g1667 214 Pfam YABBY protein 13 176 IPR006780 GO:0007275
Psa4g1667 214 PANTHER PROTEIN YABBY 6-RELATED 1 212 IPR006780 GO:0007275
Psa4g1667 214 SUPERFAMILY HMG-box 120 169 IPR036910 -
Psa4g1667 214 Gene3D High mobility group box domain 121 172 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1667 Psa-Chr4 117804122 117806743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1667 24 212 C2C2-YABBY Transcription Factor Family AT4G00180 60.190 2.93e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Psa4g1667 YABBY 7.1e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1667 K25796 - gmx:100798441 381.719