Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1619 ATGAACACATTTTCACATGTACCTCCCGGCTTTCGTTTTCATCCAACCGATGAAGAACTTGTTGATTACTATCTCAGGAAGAAGGTTTCGTCCAAAAAGATCGATCTAGATGTCATCAAAGACGTCGATCTTTATAAAATTGAACCATGGGATCTTCAAGAATTATGCAAAATAGGAAGTGATGAACAAAATGATTGGTATTTCTTTAGTCATAAAGATAAGAAGTATCCGACCGGAACTCGAACCAATAGGGCAACAAAAGCAGGATTCTGGAAAGCCACAGGAAGAGATAAGGCAATATATTCAAAACAGTTTCTAGTTGGAATGAGAAAGACTCTTGTGTTTTACAAGGGACGTGCCCCAAATGGACAGAAATCTGATTGGATCATGCATGAGTATCGTCTTGAAACTAATCAAAATGGAACTTCTCAGGAAGAAGGTTGGGTTGTTTGCAGGGTATTCAAGAAGAGAATGACAACAGTACAGAAAATGAGTGAGTATGATCAATCACCATGTAACTGGTACGATGATCAAGTTTCCTTCATGCCTGATCTTGAATCTCCAACTAGAACCAATTCTCACCCAAATTACACTTCTTCATACCAATCATGCAAACCAGAACTTGAGTTAATGCAATACAACATAATACCAAACCATCAATACCATGATCTTCCACATCTTCAAAGCCCTAAAATCACTCCATCAGTTATTATCCCTTATAACCATGCTCATGCAAACAATAACAATATTGCACTCACTCAACAACAACAACAGATGCAGTATTTGCAGTACCATCAACAAAATCTTCACTCCATCTACGGCGGAAACAGCAGCACTGGGAATGTTAATGATGAACAAGTCACTGATTGGAGAGTTCTTGACAAGTTTGTTGCTTCTCAGCTTAGTCAAGAAGATAATAATAATAATAGTAATAATAATCAAGATCATGTTTCTAATAAACAAAATAGTTCTTTCTCAAATGCAGCTATACTTCAAGTTGCGGAACAGATTACTCTTCTTGCTAGTGATTCCAAAAAGAATGAAGCTTCTGAGGAACATGCTTCAACTTCTACCTCAAGTTGCCACATGGAACTCTGGAAGTGA 1104 0.3741 MNTFSHVPPGFRFHPTDEELVDYYLRKKVSSKKIDLDVIKDVDLYKIEPWDLQELCKIGSDEQNDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKQFLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNQNGTSQEEGWVVCRVFKKRMTTVQKMSEYDQSPCNWYDDQVSFMPDLESPTRTNSHPNYTSSYQSCKPELELMQYNIIPNHQYHDLPHLQSPKITPSVIIPYNHAHANNNNIALTQQQQQMQYLQYHQQNLHSIYGGNSSTGNVNDEQVTDWRVLDKFVASQLSQEDNNNNSNNNQDHVSNKQNSSFSNAAILQVAEQITLLASDSKKNEASEEHASTSTSSCHMELWK* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1619 367 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 330 - -
Psa4g1619 367 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 330 - -
Psa4g1619 367 MobiDBLite consensus disorder prediction 344 367 - -
Psa4g1619 367 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Psa4g1619 367 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Psa4g1619 367 MobiDBLite consensus disorder prediction 353 367 - -
Psa4g1619 367 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Psa4g1619 367 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1619 Psa-Chr4 113445518 113450081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1619 1 367 NAC Transcription Factor Family AT1G12260 57.724 8.79e-141 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa4g1619 NAM 1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1619 - - gmx:100797916 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1619 4 113445518 113450081 Psa4g1619 4 113445518 113450081 ECH
Psa2g4072 2 418417175 418420027 Psa4g1619 4 113445518 113450081 PCT