Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1589 ATGAATACACTTTCTTCTTCCATTTTCTTCCTCTTCTCTCTCCTCATACCTTCTCTCATTTCATCTTCACCCCTTCAAGACCCTCATTCCGTCACTCAAGAAGTTAATAGGAAAATCAATGGCTCATTAGCTAGGAGGAACCTGGGGTACTTATCATGTGGAAGTGGAAACCCAATTGATGATTGTTGGAGGTGTGACCCAAACTGGGAAAACAACAGACAGAGGCTAGCAGATTGTGCAATTGGCTTCGGCAAGAACGCTATAGGTGGAAAGAACGGTAAAATCTACGTCGTAACAGACTCCGGCAACGATGATCCGGTGACACCGAAGCCCGGTACGCTCCGTTACGCGGTGATTCGAGAAGAACCGTTATGGATAATATTTGCAAGAGACATGGTGATTCAACTAAAAGAAGAACTGATAATGAATTCTTTCAAGACAATTGATGGAAGAGGAGCGAGTGTTCACATTGCTGGTGGTCCTTGTATTACAATCCAATGTAGGCATGGTTATTTCCATGTGGTGAACAATGACTATACTCATTGGGAAATGTATGCTATTGGTGGAAGTGCTAATCCAACTATCAATTGTCAAGGGAACCGATTCGTTGCTCCTGATGACAGATTCAGCAAGGAGGTGACAAAGCATGAGGATGCACCGGACGGCGAATGGAAGGGATGGAATTGGAGATCGGATGGCGATTTAATGTTGAACGGTGCATTTTTTACGCCATCGGGTGCAGGAAGAGGAGCGGCTTCGAGCTATGCAAGAGCTTCGAGTTTAAGTGCAAGACCATCTTCGCTGGTGGGATCAATAACAACTGGTGCTGGTGTACTCAGCTGTAAAAAGGGCTCTCGTTGTTGA 864 0.4514 MNTLSSSIFFLFSLLIPSLISSSPLQDPHSVTQEVNRKINGSLARRNLGYLSCGSGNPIDDCWRCDPNWENNRQRLADCAIGFGKNAIGGKNGKIYVVTDSGNDDPVTPKPGTLRYAVIREEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQCRHGYFHVVNNDYTHWEMYAIGGSANPTINCQGNRFVAPDDRFSKEVTKHEDAPDGEWKGWNWRSDGDLMLNGAFFTPSGAGRGAASSYARASSLSARPSSLVGSITTGAGVLSCKKGSRC* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1589 287 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Psa4g1589 287 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Psa4g1589 287 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Psa4g1589 287 Gene3D - 166 280 IPR012334 -
Psa4g1589 287 Gene3D - 56 165 IPR012334 -
Psa4g1589 287 SUPERFAMILY Pectin lyase-like 77 286 IPR011050 -
Psa4g1589 287 PANTHER PECTATE LYASE 3 166 - -
Psa4g1589 287 PANTHER PECTATE LYASE 166 284 - -
Psa4g1589 287 PANTHER PECTATE LYASE 18-RELATED 166 284 IPR045032 GO:0030570
Psa4g1589 287 PANTHER PECTATE LYASE 18-RELATED 3 166 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1589 Psa-Chr4 110419723 110421788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1589 166 287 Polysaccharide Lyase AT5G63180 77.869 2.06e-57 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1589 K01728 - gmx:100101868 280.411