Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1584 ATGGGAAAGGCATCACGGTGGTTTCGCGGTTTTCTCGGTCTAAAAAAACCGGAATACGGTTCAACCGATCAGAAACCACCGAAAGAAAAACGTCGATGGAGTTTCGTTAAATCATACAGAGAAGAAGAAGAACAACAACAGAATCACAACAGCCACGTCACGTTCTCAACAGAACACGTCCACAACAACAACAAACAGGCCATCGCAGTCGCTGCTGCCACCGCGGCCGCTGCGGAGGCTGCCGTAGCCGCTGCTAAAGCAGCTGCCGACGTTGTGAGATTCAATAGCAGCAACGGCATCGGCAGGATACGCGAACAATGGGCGGCCGTTAAGATCCAAGCCGCGTTTCGCGGAAGTTTGGCGAGGAAGGCGCTGCGGGCATTAAAAGGGCTGGTGAAGCTCCAGGCTCTTGTGAGAGGTCACATTGAGAGGAAAAGGACAGCAGAGTGGCTCAAACGGATGCAATCACTTATACGAGCACAGGCACGGTTTAATGCATCACGCGCCCTTCAAACATCACATTCTAATGGGGGTCCAGCAACACCAGAGAAATCAGAAAGCCCTGTTAGATCTAGGAGTATGAAATCCGAGCATTCTTCAATACTCAAGAGAAACGGTTCCAAATCATGTCTCTCGTTCAGCAGCAATATATCAGAGAATCAGATAGATGAACAATCATGGAATAGAGTAAAATCACTGATAAGGTCATATAGCAGGAGCGACGAAAAAAACGAAAGGATTGTGGAAATTGATTCGGGAAAACAGCACATAATCTCAAAACGTAGAAACCTCTTTCATTCCATAAGTGATACTGATCATTATTATTATAGTCAAAATTTAACCCCTACAAAGGAATCAAAATCTCATCAATCTAGTCAAAGTCAATCATGTGAGGTTCAATCTTATTACAACCCACTTAAACTCAGCGAAGTTGAAGAGAATAGTCCTCAATTTTTATCATCTGCAACTTCAAAAGAGGATGGATACAAAAGAAGCCCTTTTACTCCTACAAAGAGTGATGGATCAAGAAGCTCCCTTAGAGGCTATTCTGATTACCCAAGTTACATGGCTTATACAGAGTCATCAAAGGCCAAAGTTAGATCTATGAGTGCACCAAAACAAAGGCCTCAACATGAGAAATCTGGTTCATCTAATAGGTACTCACTCAATGGACATGACATTGCAAGATTGGCTGCACAGAGAAATTCTGCACTGCAAGCAAGTTTTGCAAGTAAAGGGTATCCAGGTTCTGGTCGTTTGGATAAGCTTGGAATGCCTGTGGGGTATAGATAA 1293 0.4416 MGKASRWFRGFLGLKKPEYGSTDQKPPKEKRRWSFVKSYREEEEQQQNHNSHVTFSTEHVHNNNKQAIAVAAATAAAAEAAVAAAKAAADVVRFNSSNGIGRIREQWAAVKIQAAFRGSLARKALRALKGLVKLQALVRGHIERKRTAEWLKRMQSLIRAQARFNASRALQTSHSNGGPATPEKSESPVRSRSMKSEHSSILKRNGSKSCLSFSSNISENQIDEQSWNRVKSLIRSYSRSDEKNERIVEIDSGKQHIISKRRNLFHSISDTDHYYYSQNLTPTKESKSHQSSQSQSCEVQSYYNPLKLSEVEENSPQFLSSATSKEDGYKRSPFTPTKSDGSRSSLRGYSDYPSYMAYTESSKAKVRSMSAPKQRPQHEKSGSSNRYSLNGHDIARLAAQRNSALQASFASKGYPGSGRLDKLGMPVGYR* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1584 430 Pfam Protein of unknown function (DUF4005) 315 395 IPR025064 -
Psa4g1584 430 MobiDBLite consensus disorder prediction 313 346 - -
Psa4g1584 430 SMART iq_5 104 126 IPR000048 GO:0005515
Psa4g1584 430 SMART iq_5 127 148 IPR000048 GO:0005515
Psa4g1584 430 Pfam IQ calmodulin-binding motif 107 126 IPR000048 GO:0005515
Psa4g1584 430 Pfam IQ calmodulin-binding motif 132 146 IPR000048 GO:0005515
Psa4g1584 430 MobiDBLite consensus disorder prediction 168 182 - -
Psa4g1584 430 MobiDBLite consensus disorder prediction 363 387 - -
Psa4g1584 430 PANTHER IQ-DOMAIN 5-RELATED 1 426 - -
Psa4g1584 430 ProSiteProfiles IQ motif profile. 129 156 IPR000048 GO:0005515
Psa4g1584 430 Gene3D - 104 156 - -
Psa4g1584 430 MobiDBLite consensus disorder prediction 188 202 - -
Psa4g1584 430 PANTHER CALMODULIN BINDING PROTEIN IQD22 1 426 - -
Psa4g1584 430 ProSiteProfiles IQ motif profile. 105 133 IPR000048 GO:0005515
Psa4g1584 430 MobiDBLite consensus disorder prediction 168 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1584 Psa-Chr4 110247293 110250708 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1584 90 430 IQD Protein Family AT4G23060 44.892 2.13e-66 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1584 - - gmx:100793587 468.774