Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1580 ATGAAGAGGTCCAAAGATGATGTTTACATGAGTTCACAACTCAAACGCCCCATGCTGTCTTCTAGAGGAGAACCCTCGGGGCAACCCCAGGTGATGAGTGGTGGTCAGAAGTTAACGACAAATGACGCATTATCATATCTAAAGGCGGTAAGGGAAATGTTTCAAGATGATAAAGAGAAGTATGATGAGTTTTTGGAAGTCATGAAGGATTTTAAGGCCCAAAGAATTGATACAGCTGGTGTCATAGAAAGAGTGAAGGAGCTTTTTAAAGGACATAAAGATTTAATTTTGGGATTTAACACCTTCTTGCCAAAGGGATATGCAATCACACTTCCATTGGAAGATGAACAACCTCCACAGAAAAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGGGCAAGATTAAGACTCGTTTTCAAGGTAATGACCGTGTTTACAAGACTTTTTTAGACATACTAAATATGTACAGAAAGGAAACCAAGTCTATCACTGTGGTTTACCAAGAGGTTTCTGCCCTCTTTCAAGACCATGCAGATCTTCTCGAGGAGTTTACTCACTTCCTTCCTGATACCTCTGGAGCTGCCTCTGCTCATTTTTCTGCTCGTAATTCTCTCCGTGATAGGAGCTCTGCAATGGCAACAGCAAGGCAAATGCATGTTGACAAGAGAGAAAAGACAACAGCTTTGCACGCTGATCGTGATCTCAGCGTTGATCATACTGATCCAGAACTGGACAGAGGTGTGATGAGGGCTGATAAGGAGCAGAGAAGACGCGAGAGAGAAAAGGACCGTAGAGAAGAGAGAGATAGGAGAGAACGGGATAGGGATGATAGAGATTATGATAATGACGGTAGTCGTGAGCGCTTATCCCACAAGCGAAAATCTGGTCATAGAGCTATAGACCCTGGTACTGAACTATTGCATGATGCAGATGAAAAGCTTGACATGCGCCCTATCTCGTCTGCTTCTGAGGATAAAAGTTCTTTGAAAAGTATGTGTAGTCCAGTGCTTGCTTTCCTTGAAAAAGTCAAGGAGAAGTTAAGAGGTCCTGAGGATTACCAGGAATTTTTGAAGTGCCTACATATCTACAGCAGGGAAATAATCACCCGACAAGAACTACTGGCATTGGTGGGTGATTTACTGGGAAAATATGCTGATATTATGGAAGGATTTGATGAGTTTGTGACACAATGTGAACAAAATGAAGGATTCCTTGCTGGTGTCATGAATAAAAAATCCTTGTGGAATGAAGGACATGGACAGAAACCAATGAAGGCAGAGGATAAGGATAGAGATCGTGACAGGGATGATGGGGTGAAAGAAAGGGATCGTGAACTCCGGGAAAGAGACAAATCCACTGGAATTGCCAACAAGGATGTTTCTATTCCTAAGGTGTCTTTAAGCAAGGACAAGTATGTAGGAAAACCTATAAATGAACTGGACCTTTCTAACTGTGAACAATGTACTCCTAGTTACCGTCTTCTACCAAAAAATTACCCAATACCGATAGCTAGCCAGAGAACTGAACTAGGTGATGAAGTATTGAATGATCACTGGGTTTCTGTTACGTCAGGAAGTGAGGATTATTCCTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGCGAAGACGACAGGTTTGAACTTGATATGTTGCTAGAGTCTGTTAATGTGACAAATAAGAGAGTTGAAGAGATCTTAGAAAAAGTTAATGCTAATATCATTCCAGGAGACATCCCAATTCGTATTGAGGAGCACTTAACAGCCCTAAACCTTAGGTGCATTGAACGATTATATGGTGACCATGGGCTTGATGTGATGGATGTATTGAAAAAGAATGCATCTCTTGCTTTGCCGGTGATATTAACCCGCTTGAAGCAGAAACAGGAGGAGTGGGCAAGATGCCGTGCAGATTTTAATAAAGTCTGGGCTGAAATATATTCGAAAAATTATCACAAATCACTTGATCACCGAAGCTTTTACTTTAAGCAGCAGGATGCAAAAAGCTTGAGCACTAAAGCCTTATTGGGAGAGATCAAAGAAATTAGCGAGAAGAAACGAAAAGAAGATGATGTTCTTCTTGCCATTGCTGCTGGAAATAGACGGCCTATTCTTCCTAACTTGGAATTTGAGTATCCTGATCCAGAGATTCACGAAGATTTGTATCAACTTATAAAATATTCATGTGGAGAAGTTTGTACAACTGAACAATTGGATAAAGTCATGAAGATTTGGACAACATTTTTAGAGCCTATACTTGGTGTTCCTTCTCGACTGCGCATTCCCGAAGACACTGAAGATGCTGTCAAGGCTAAGATTGATTCTGCTAAAACTGGCACAACAAGTATTGCCAAGGGTCATAGTAGTCCTGGTGTTGGTGCTACCATAATGAATCCTAAGAATTTAAACACTAGTAGAAATGGGGATGCAAGTGTTCCATTTGAACAATCAAATTCCTGCAAAGAATGGCAAGCAAATGGGGTAGGTGGGGTTAAAGAGGATGATTGTCTCGAATCATACCGTTCTGGTCCTAAGACTGAAACTTTGGGAAGTAGTACGCTGCAGGGTAAAATTCATATTGGTGCATCCATTCCTGATGAAGTATCAAGAGTCAATAAGCAAGATCATTCCATTGAACAGTTGGTGAATGCTAATGTCTCACTGTCCTCTGGAATGGAGCAAAGTAATGGAAGAACAAACATAAATAATGCAACAGGACTTGCCGCAACTCCGTCTAGACTTGGTTATGTTTCTAGTGAGGGAGGGCATGATTTACATTCATCAGAGGGTGCTGATTCTACAAGACTAGATATGTCCACAAATGGGGCCATCACCAAAGACACCAAAGTTCACAGATCTCACAAAGAATCAGTTGGACACTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGACTTTGAAGAGGATAACTTTGCAGTTTATGCAAATGCTGGTCTGGAGGCAGCACATAAAGGAAAAGATTGTAATACCAGTCAACAATACCAAAATAGACACGGGGAACAAAATTGTGGTGAAGCTGGAGGTGAAAATGACAATGAAAGTGATGGAAGTCCTCATAGATCATCGGATGACAGTGAAAATGCATCTGAGAATGGTGAGGTTTCTGGTACCGAGTCTGCTGATGGCGAGGAATGTTCTCGAGAAGAACACGAAGAGAATGGGGATCATGAACATGATAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATGGCGGATGCCAATGATGTTGAAGGAGATGGAGCCTCATTGTCATACTCTGAACGCTTTCTTCTCACAGTAAAGCCTCTGGTAAAACATGTTCGCCCGATGTTGCACGGGAAAGAAAAGAATGTTCAAATATTTTATGGAAATGATTCCTTTTATGTGCTGTTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATAAACTCATCCTCCGCCGAAAGGAAATGGAGAGCTTCGAATGATACAGTTTCTCCTGATCAATATGGCAGGTTCATGAGTTCTCTTTACAGTTTGCTGGATGGTTCTTCTGATAATTCAAAATTTGAGGATGACTGTCGCGCTATTATTGGAACCCAGTCGTATGTCTTGTTCACGTTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCAGTGCTACTGATGAGATGGATAACAAACTTCTTCAACTATATGCATATGAGCAATCAAGAAAACCTGGAAGCTTTGTGGATATAGTTTATCATGAAAATGCTCGTGTTCTTCTTCACGATGAGAACATATATCGTATTGAGTGTTCGTCTACACCACCACGATTGTCTATTCAGTTGATGGATTACGGACACGATAAGCCTGAAGTGACTGCTGTGTCAATAGATCCTAATTTTTCAGCCTATCTGCACAACGACTTCTTATCTGTTGTCCCCGACAGCAAGGAGAAATCCGGAATTTTCTTAAAAAGGAATAAGCTAAAATGTGCTTGGAGTGATGAATTTCCAAGCCAGATTATGGATGGAGTACAAGTTACCAATGGTCTGGAGTGTAAGATTGCTTGCAATTCATCCAAGGTTTCATACGTTTTAGATACCGAAGACTCTCTATTTCGAACAAAGCGGAAAAGGAGAATTTTGAATCAGAAGAATTCTTATCGTGAACAGACAACGTCTTCAAACATTTGTTCAAGTAGAGCACAGCGGTTCTGCAAATTATTTTCCATCAAATGA 4254 0.4071 MKRSKDDVYMSSQLKRPMLSSRGEPSGQPQVMSGGQKLTTNDALSYLKAVREMFQDDKEKYDEFLEVMKDFKAQRIDTAGVIERVKELFKGHKDLILGFNTFLPKGYAITLPLEDEQPPQKKPVEFEEAINFVGKIKTRFQGNDRVYKTFLDILNMYRKETKSITVVYQEVSALFQDHADLLEEFTHFLPDTSGAASAHFSARNSLRDRSSAMATARQMHVDKREKTTALHADRDLSVDHTDPELDRGVMRADKEQRRREREKDRREERDRRERDRDDRDYDNDGSRERLSHKRKSGHRAIDPGTELLHDADEKLDMRPISSASEDKSSLKSMCSPVLAFLEKVKEKLRGPEDYQEFLKCLHIYSREIITRQELLALVGDLLGKYADIMEGFDEFVTQCEQNEGFLAGVMNKKSLWNEGHGQKPMKAEDKDRDRDRDDGVKERDRELRERDKSTGIANKDVSIPKVSLSKDKYVGKPINELDLSNCEQCTPSYRLLPKNYPIPIASQRTELGDEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTNKRVEEILEKVNANIIPGDIPIRIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQEEWARCRADFNKVWAEIYSKNYHKSLDHRSFYFKQQDAKSLSTKALLGEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFEYPDPEIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPILGVPSRLRIPEDTEDAVKAKIDSAKTGTTSIAKGHSSPGVGATIMNPKNLNTSRNGDASVPFEQSNSCKEWQANGVGGVKEDDCLESYRSGPKTETLGSSTLQGKIHIGASIPDEVSRVNKQDHSIEQLVNANVSLSSGMEQSNGRTNINNATGLAATPSRLGYVSSEGGHDLHSSEGADSTRLDMSTNGAITKDTKVHRSHKESVGHFKSEREEGELSPNGDFEEDNFAVYANAGLEAAHKGKDCNTSQQYQNRHGEQNCGEAGGENDNESDGSPHRSSDDSENASENGEVSGTESADGEECSREEHEENGDHEHDKAESEGEAEGMADANDVEGDGASLSYSERFLLTVKPLVKHVRPMLHGKEKNVQIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWRASNDTVSPDQYGRFMSSLYSLLDGSSDNSKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVASATDEMDNKLLQLYAYEQSRKPGSFVDIVYHENARVLLHDENIYRIECSSTPPRLSIQLMDYGHDKPEVTAVSIDPNFSAYLHNDFLSVVPDSKEKSGIFLKRNKLKCAWSDEFPSQIMDGVQVTNGLECKIACNSSKVSYVLDTEDSLFRTKRKRRILNQKNSYREQTTSSNICSSRAQRFCKLFSIK* 1418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1580 1417 Gene3D Paired amphipathic helix 42 104 IPR036600 GO:0006355
Psa4g1580 1417 MobiDBLite consensus disorder prediction 1055 1082 - -
Psa4g1580 1417 MobiDBLite consensus disorder prediction 422 453 - -
Psa4g1580 1417 MobiDBLite consensus disorder prediction 1027 1042 - -
Psa4g1580 1417 MobiDBLite consensus disorder prediction 924 981 - -
Psa4g1580 1417 Gene3D Paired amphipathic helix 329 401 IPR036600 GO:0006355
Psa4g1580 1417 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1389 - -
Psa4g1580 1417 Coils Coil 252 272 - -
Psa4g1580 1417 MobiDBLite consensus disorder prediction 14 35 - -
Psa4g1580 1417 MobiDBLite consensus disorder prediction 417 453 - -
Psa4g1580 1417 MobiDBLite consensus disorder prediction 937 951 - -
Psa4g1580 1417 Pfam C-terminal domain of Sin3a protein 1129 1377 IPR031693 -
Psa4g1580 1417 MobiDBLite consensus disorder prediction 1001 1015 - -
Psa4g1580 1417 ProSiteProfiles PAH domain profile. 36 106 IPR003822 GO:0006355
Psa4g1580 1417 MobiDBLite consensus disorder prediction 952 975 - -
Psa4g1580 1417 MobiDBLite consensus disorder prediction 1 35 - -
Psa4g1580 1417 Gene3D Paired amphipathic helix 120 193 IPR036600 GO:0006355
Psa4g1580 1417 SUPERFAMILY PAH2 domain 118 191 IPR036600 GO:0006355
Psa4g1580 1417 MobiDBLite consensus disorder prediction 1001 1085 - -
Psa4g1580 1417 SMART hdac_interact2seq4b 485 585 IPR013194 -
Psa4g1580 1417 Coils Coil 558 578 - -
Psa4g1580 1417 Pfam Paired amphipathic helix repeat 352 396 IPR003822 GO:0006355
Psa4g1580 1417 Pfam Paired amphipathic helix repeat 146 189 IPR003822 GO:0006355
Psa4g1580 1417 Pfam Paired amphipathic helix repeat 59 103 IPR003822 GO:0006355
Psa4g1580 1417 ProSiteProfiles PAH domain profile. 330 399 IPR003822 GO:0006355
Psa4g1580 1417 Pfam Sin3 family co-repressor 487 577 IPR013194 -
Psa4g1580 1417 SUPERFAMILY PAH2 domain 335 399 IPR036600 GO:0006355
Psa4g1580 1417 MobiDBLite consensus disorder prediction 218 314 - -
Psa4g1580 1417 PANTHER SIN3B-RELATED 1 1389 IPR039774 GO:0003714
Psa4g1580 1417 ProSiteProfiles PAH domain profile. 122 192 IPR003822 GO:0006355
Psa4g1580 1417 SUPERFAMILY PAH2 domain 35 105 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1580 Psa-Chr4 110133320 110148026 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1580 28 118 WRKY Transcription Factor Family AT4G12020 56.383 8.78e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa4g1580 Sin3a_C 1.8e-57 No_clan