Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1576 ATGAAATCATCACTTAATGAGTCTAGCTACGGACACAAATCAGAATACTCCTACTACTCAACTTCATCATCATTGGAAAAAAGTTGCTACGAAGAAATATTGTTAGCGTCGGAGCAACCAAAGAGGCGTGCTGGGAGGCGAAAATTCAAGGAGACAAGACATCCAGTATACAGAGGAGTACGAAGGAGGAACAACAATAAGTGGGTTTGTGAGGTGCGTGTTCCGAACGACAAGTCCACGAGGATCTGGTTAGGAACATATCCATCGCCTGAGATGGCGGCACGTGCACACGACGTTGCTGCGTTGGCGCTCCGTGGCAAATCAGCTTGTGTCAACTTTGCTGACTCGGTTTGGCGGTTGCCGTTGCCGGTGTCGACTAACGTGAAGGAGATTAGGAAAATGGCGGCGGAGGCTGCTTTAGCATTTGAGGTTGAGGAGAGTGATGAACAACTGATGATAAGTAGTGATTCTGATGTTTGCAACAGCGATATTAATAGCGTTGGTGTTATGGAAGATGATAATAAAAGTTTGAAGGAATTGTGTGTGGAAGTTCCAGGTGTTTCCATATTTGAGGAGCAGGAAGTGTTGCATGACTGGTTCCGGAGTATGGCAGATGAGCCATTACGATCTCCGACGAGTCCATTTATGATATATGGTAGGGATCATTGGAGTAACATTGATATTGATCAGGTTGAGGTGCCTTTGTGGAGCTTTACCATCTAA 723 0.455 MKSSLNESSYGHKSEYSYYSTSSSLEKSCYEEILLASEQPKRRAGRRKFKETRHPVYRGVRRRNNNKWVCEVRVPNDKSTRIWLGTYPSPEMAARAHDVAALALRGKSACVNFADSVWRLPLPVSTNVKEIRKMAAEAALAFEVEESDEQLMISSDSDVCNSDINSVGVMEDDNKSLKELCVEVPGVSIFEEQEVLHDWFRSMADEPLRSPTSPFMIYGRDHWSNIDIDQVEVPLWSFTI* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1576 240 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 3 240 IPR045277 GO:0003700
Psa4g1576 240 ProSiteProfiles AP2/ERF domain profile. 56 114 IPR001471 GO:0003700|GO:0006355
Psa4g1576 240 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3 240 - -
Psa4g1576 240 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Psa4g1576 240 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Psa4g1576 240 SMART rav1_2 56 120 IPR001471 GO:0003700|GO:0006355
Psa4g1576 240 Pfam AP2 domain 55 106 IPR001471 GO:0003700|GO:0006355
Psa4g1576 240 SUPERFAMILY DNA-binding domain 56 116 IPR016177 GO:0003677
Psa4g1576 240 CDD AP2 57 116 IPR001471 GO:0003700|GO:0006355
Psa4g1576 240 Gene3D AP2/ERF domain 56 115 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1576 Psa-Chr4 109869525 109870472 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1576 35 238 AP2-EREBP Transcription Factor Family AT5G51990 49.758 8.39e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa4g1576 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1576 - - pvu:PHAVU_003G212800g 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1576 4 109869525 109870472 Psa4g1576 4 109869525 109870472 ECH
Psa4g1576 4 109869525 109870472 Psa2g4140 2 420631320 420633294 PCT