Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1575 ATGTCACTGGCCCGCAACCAACACAAAAACCAACTGTTCCCGTGTCCGTGTCCACGTCGTAGCCACGTGCAACATTTCCTAATAAACCTCCAAAATATATACTTCCTCATTCTTCTCTCAAGTTCAGCATTTGTTTTTATTCAAGTAATTTATACACAAAGCAAGATAATACAAATGAAATCATCACTAGATGAGTCTAGCTACGGAGACATATCAGACTACTCCTACTACCCACCGCCATCATTATCGGAAACAAGTTGCTACGAAGAAATATTGTTAGCGTCGGAGCAACCAAAGAGGCGTACTGGGAGACGAAAATTCAAGGAGACAAGACATCCAGTATACAGAGGAGTACGAAGGAGGAACAACAATAAGTGGGTTTGTGAGGTGCGTGTTCCGAACGACAAGTCCACGAGGATCTGGTTAGGAACATATCCATCGCCTGAGATGGCGGCACGTGCACACGACGTTGCTGCGTTGGCGCTCCGTGGCAAATCAGCTTGTGTCAACTTTGCTGACTCGGTTTGGCGGTTGCCATTGCCGGTGTCGACTAATGTGAAGGAGATTAGGAAAGTGGCGGCGGAGGCTGCTTTAGCATTTGCGGTTGAGGAGAGTAATGAACAACTGATGATAAGTAGTGATTCTGATGTTTGCAACAGCGATATTAATAGCGTTGGTGTTATGGAAGATGATAATAAAAGTTTGAAGGAATTGTGTGTGGAAGTTCCAGGTGTTTCCATATTTGAGGAGCAGGAAGTGTTGCATGACTGGTTCCAGAGTATGGCAGATGAGCCTTTACGATCTCCTACGAATCCATTTATTATATGTGGTAGGGATCATTGGAATAACATTGATATTGATCAGGTTGAGGTGCCTTTGTGGAGCTTTACCATCTAA 897 0.4426 MSLARNQHKNQLFPCPCPRRSHVQHFLINLQNIYFLILLSSSAFVFIQVIYTQSKIIQMKSSLDESSYGDISDYSYYPPPSLSETSCYEEILLASEQPKRRTGRRKFKETRHPVYRGVRRRNNNKWVCEVRVPNDKSTRIWLGTYPSPEMAARAHDVAALALRGKSACVNFADSVWRLPLPVSTNVKEIRKVAAEAALAFAVEESNEQLMISSDSDVCNSDINSVGVMEDDNKSLKELCVEVPGVSIFEEQEVLHDWFQSMADEPLRSPTNPFIICGRDHWNNIDIDQVEVPLWSFTI* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1575 298 Gene3D AP2/ERF domain 114 173 IPR036955 GO:0003700|GO:0006355
Psa4g1575 298 Pfam AP2 domain 113 164 IPR001471 GO:0003700|GO:0006355
Psa4g1575 298 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 60 298 IPR045277 GO:0003700
Psa4g1575 298 SUPERFAMILY DNA-binding domain 114 174 IPR016177 GO:0003677
Psa4g1575 298 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Psa4g1575 298 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Psa4g1575 298 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 60 298 - -
Psa4g1575 298 ProSiteProfiles AP2/ERF domain profile. 114 172 IPR001471 GO:0003700|GO:0006355
Psa4g1575 298 CDD AP2 115 174 IPR001471 GO:0003700|GO:0006355
Psa4g1575 298 SMART rav1_2 114 178 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1575 Psa-Chr4 109838517 109839746 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1575 93 296 AP2-EREBP Transcription Factor Family AT5G51990 50.242 8.21e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa4g1575 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1575 - - gmx:100795696 249.595