Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1574 ATGTCTTCTTCTTCTTCTTCCAAAAGACACCCAACATACCACGGAATTCGAAGCCGGGGAGGAAAATGGGTGACTGAAATCCGCGAGCCTCGCAAAACCAACCGCATATGGCTAGGCACATTCCCCACCCCTGAGATGGCAGCCGCAGCATATGATGTTGCGGCTATGGCTCTCAAAGGTCGGGACGCAGTGCTAAACTTTCCCGACAGGGCTAGCATGTATCCGGTCCCGGCTTCCAATTCTGCCGATGACATACGTAACGCTGCCATTGCTGCAGCTGAATTCATGAACGCTGAATCCACCAATGGTGCTGGTTTTGAAGTTAATCCTTCGTATCAAACCGATCAGTTTCTTGATGAAGAAGCTATATTCTCTATGCCAAGTTTGATGGTAGCAATGGCGGAGGGAATGATGCTTTCACCTCCCAGAATGAATCCACCACCCTCTGATTACTCACATGATCAATATTACACTATGGGGCAGAGTTTGTGGAATCATTTTTGA 504 0.4821 MSSSSSSKRHPTYHGIRSRGGKWVTEIREPRKTNRIWLGTFPTPEMAAAAYDVAAMALKGRDAVLNFPDRASMYPVPASNSADDIRNAAIAAAEFMNAESTNGAGFEVNPSYQTDQFLDEEAIFSMPSLMVAMAEGMMLSPPRMNPPPSDYSHDQYYTMGQSLWNHF* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1574 167 SUPERFAMILY DNA-binding domain 12 69 IPR016177 GO:0003677
Psa4g1574 167 PANTHER ETHYLENE RESPONSE FACTOR 2 167 - -
Psa4g1574 167 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
Psa4g1574 167 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 167 - -
Psa4g1574 167 CDD AP2 13 69 IPR001471 GO:0003700|GO:0006355
Psa4g1574 167 Gene3D AP2/ERF domain 12 69 IPR036955 GO:0003700|GO:0006355
Psa4g1574 167 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700|GO:0006355
Psa4g1574 167 Pfam AP2 domain 14 60 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1574 Psa-Chr4 109711135 109712371 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1574 2 166 AP2-EREBP Transcription Factor Family AT5G52020 49.444 3.58e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa4g1574 AP2 6.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1574 - - gmx:100778793 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1574 4 109711135 109712371 Psa4g1574 4 109711135 109712371 ECH