Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1572 ATGTCTCCTTCTTCTTCCAAAAGACATCCAACTTACCACGGAATTCGAAGCCGTGGAGGAAAATGGGTGACTGAAATCCGCGAGCCTCGCAAAACCAACCGCATATGGCTGGGCACATTCCCCACCCCTGAGATGGCAGCCGCAGCGTATGACGTTGCGGCTTTGGCTCTCAAAGGTCGGGACGCAGTGCTAAACTTTCCTGACAGGTCTAGCATGTATCCAGTGCCGGCGTCCAATTCTTCCGATGACATACGCAATGCTGCCACTGCTGCAGCCGAACTCATGAACACTGAATTCAGCAATGATGCTGATTTTGAAGTTAATCCTTCGTATGAAACGGATCAGTTTCTTGATGAAGAAGCTATATTCTCCATGCCAAGTTTGATGGTAGCAATGGCGGAGGGAATGATGCTTTCACCTCCCAGAATAAACCCACCACCCTCTGATTACTCACATGATCAATATTACACTATGGGACAAAGTTTGTGGAACCATTTTTGA 501 0.479 MSPSSSKRHPTYHGIRSRGGKWVTEIREPRKTNRIWLGTFPTPEMAAAAYDVAALALKGRDAVLNFPDRSSMYPVPASNSSDDIRNAATAAAELMNTEFSNDADFEVNPSYETDQFLDEEAIFSMPSLMVAMAEGMMLSPPRINPPPSDYSHDQYYTMGQSLWNHF* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1572 166 CDD AP2 12 68 IPR001471 GO:0003700|GO:0006355
Psa4g1572 166 Gene3D AP2/ERF domain 11 68 IPR036955 GO:0003700|GO:0006355
Psa4g1572 166 MobiDBLite consensus disorder prediction 1 20 - -
Psa4g1572 166 SUPERFAMILY DNA-binding domain 11 68 IPR016177 GO:0003677
Psa4g1572 166 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700|GO:0006355
Psa4g1572 166 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 166 - -
Psa4g1572 166 Pfam AP2 domain 13 59 IPR001471 GO:0003700|GO:0006355
Psa4g1572 166 SMART rav1_2 11 73 IPR001471 GO:0003700|GO:0006355
Psa4g1572 166 PANTHER ETHYLENE RESPONSE FACTOR 2 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1572 Psa-Chr4 109478280 109479403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1572 6 165 AP2-EREBP Transcription Factor Family AT5G52020 51.429 9.12e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa4g1572 AP2 6.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1572 - - gmx:100778793 211.075