Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1563 ATGTCTACAATTGGAACAGAATCAAGGTTAGGTTTCGTGACGGTTCATCATTTACCAGTTGTGTTAAAGCTGTTGATTCAGCAACCAATTTGCACTACAGAGGAGGAAGAATATTTGTCATTGAGGATTTACAAGCAAAGCGAATCAAAAATGCTAAAAATACAATTCTATCTAGATGTTCTGCCGGAGAATGGACTTCTATTTTACAATGTGATAAGCTTTAGAACTTCACTTCCTGCAGCAGCTGAAGTTAAATGCGTCTCAGGTGCCGGTTATCTTATCAATGCAAAAGCGGTCTCTGGAGCACAACACATTGAACAATTCTGCAGCCAAGCCGTTCAAACACATGCCTCAACAAAGAATTTGCCTTCGTCTTGCATCAAGACTTTCGCCTGTGCTGTGTTGCTGTTCGCAAAATGA 420 0.4048 MSTIGTESRLGFVTVHHLPVVLKLLIQQPICTTEEEEYLSLRIYKQSESKMLKIQFYLDVLPENGLLFYNVISFRTSLPAAAEVKCVSGAGYLINAKAVSGAQHIEQFCSQAVQTHASTKNLPSSCIKTFACAVLLFAK* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1563 139 Pfam Pectinacetylesterase 68 131 IPR004963 GO:0016787
Psa4g1563 139 PANTHER NOTUM-RELATED 73 137 IPR004963 GO:0016787
Psa4g1563 139 PANTHER PECTIN ACETYLESTERASE 73 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1563 Psa-Chr4 109153192 109153611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1563 73 139 Carbohydrate Esterase AT4G19420 41.791 3.70e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1563 K19882 - jre:108991582 77.7962