Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1562 ATGGCATCGTCATCCTCAAGCAACAGCGCAAACTACGACGTACCGTGGGTTGAGAAGTACCGACCCAGCAAGGTCGTCGACATCGTCGGCAATGAAGACGCCGTCTCCCGGCTCCAAGTCATCGCTCGTGACGGCAACATGCCCAACCTCATTTTATCAGGTCCTCCTGGAACTGGAAAAACCACTAGTATACTCGCCCTTGCGCACGAGCTTCTCGGTCCCAATTACAGAGAAGCTGTTCTTGAACTAAATGCTTCAGATGATAGAGGAATAGATGTTGTGAGGAACAAGATCAAGATGTTTGCTCAAAAGAAAGTAACACTTCCTCCAGGCCGACACAAAGTTGTTATACTCGATGAAGCTGACAGTATGACATCTGGAGCACAACAAGCTTTGAGAAGGACGATGGAGATATATTCTAATTCTACTCGTTTCGCGCTTGCTTGCAATACATCACTATCTGATCAAGAGATACTTGGTCGTCTCATGGTTGTGGTTCAAGCTGAGAAGGTTCCCTATGTCCCTGAAGGACTTGAGGCCATCATTTTCACCGCTGATGGTGATATGAGGCAGGGATTGAACAACTTGCAAGCAACATTCAGCGGGTTCCAGTTTGTTAACCAAGCAAATGTTTTTAAGGTTTGTGACCAGCCACATCCACTGCATGTGAAGAATATGGTGCGCAATGTAATTGAAGGGAATTTTGATGAGGCTTGTTCAGGGCTCAAGCAATTGTATGACTTGGGATATTCCCCCACAGATATCATCACCACTCTTTTTCGTATCATAAAAAGTTATGATATGGCTGAGTACTTGAAATTAGAATTCATGAAGGAAACTGGATTTGCTCATATGAGGATTTGTGATGGAGTTGGTTCTTATCTTCAGATGTGTGGTCTACTGGCCAAGTTTTCTTTAGCTCGCGAAACTGCTAAAGCTCCATGA 945 0.4476 MASSSSSNSANYDVPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSLSDQEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQGLNNLQATFSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKSYDMAEYLKLEFMKETGFAHMRICDGVGSYLQMCGLLAKFSLARETAKAP* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1562 314 Gene3D - 159 217 - -
Psa4g1562 314 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 7 312 - -
Psa4g1562 314 CDD HLD_clamp_RFC 153 215 - -
Psa4g1562 314 Pfam Replication factor C C-terminal domain 218 303 IPR013748 -
Psa4g1562 314 SUPERFAMILY post-AAA+ oligomerization domain-like 217 308 IPR008921 GO:0003677|GO:0006260
Psa4g1562 314 Pfam ATPase family associated with various cellular activities (AAA) 50 167 IPR003959 GO:0005524|GO:0016887
Psa4g1562 314 Gene3D - 218 309 - -
Psa4g1562 314 PANTHER REPLICATION FACTOR C SUBUNIT 2 7 312 - -
Psa4g1562 314 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 215 IPR027417 -
Psa4g1562 314 Gene3D - 5 158 IPR027417 -
Psa4g1562 314 SMART AAA_5 46 172 IPR003593 -
Psa4g1562 314 CDD AAA 29 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1562 Psa-Chr4 109102799 109108489 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1562 12 314 Core DNA Replication Machinery Family AT1G63160 87.539 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1562 K10755 - tcc:18606466 569.311